Locus 1534

Sequence ID 2L_DroMel_CAF1
Location 4,139,641 – 4,139,737
Length 96
Max. P 0.535320
window2483

overview

Window 3

Location 4,139,641 – 4,139,737
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.46
Mean single sequence MFE -24.54
Consensus MFE -18.90
Energy contribution -19.30
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.55
Structure conservation index 0.77
SVM decision value 0.00
SVM RNA-class probability 0.535320
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4139641 96 - 22407834
GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUGCGUCGA
(((.((((.....)))).((.(((((((((.(......).)))))))))..))..(((((.(....))))))))).....((((.......)))). ( -26.50)
>DroSec_CAF1 269080 96 - 1
GCCAUUGAAUGAAUCGAACAGCAUCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACGUUGA
(((.((((.....))))......(((((((..(((........)))..)))))))(((((.(....))))))))).((((((......)))))).. ( -24.30)
>DroSim_CAF1 272720 96 - 1
GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACGUUGA
(((.((((.....)))).((.(((((((((.(......).)))))))))..))..(((((.(....))))))))).((((((......)))))).. ( -26.30)
>DroEre_CAF1 283107 91 - 1
GCCAUUGAAUGAAUCGAACAGGAGCCAUUUGGUCGAAUG-----GUUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACAUCUA
(((.((((.....)))).((.(((((((((....)))))-----))))...))..(((((.(....)))))))))..(((((......)))))... ( -22.80)
>DroYak_CAF1 287697 91 - 1
GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUG-----GUUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUGCGUCUA
((((((.......((((((..(.(((....))).)....-----))))))......))))))....(((.(..(((....)).)..).)))..... ( -22.82)
>consensus
GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACGUCGA
(((.((((.....)))).......(((((..((((........))))..))))).(((((.(....)))))))))..(((((......)))))... (-18.90 = -19.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:56 2006