Locus 1531

Sequence ID 2L_DroMel_CAF1
Location 4,138,406 – 4,138,518
Length 112
Max. P 0.605279
window2476

overview

Window 6

Location 4,138,406 – 4,138,518
Length 112
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.71
Mean single sequence MFE -18.64
Consensus MFE -13.10
Energy contribution -13.52
Covariance contribution 0.42
Combinations/Pair 1.14
Mean z-score -1.22
Structure conservation index 0.70
SVM decision value 0.15
SVM RNA-class probability 0.605279
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4138406 112 + 22407834
UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC-ACCCC------CUCAGUUGCUCCUUUCUCGUUCGCAAUUCCCCGUGCGACUCCUUCUGCAAUUUAAUUGC
...((.(((((((((......))))(((....))).............-.....------.))))).)).............((((((.....((((........))))....)))))) ( -18.40)
>DroSec_CAF1 267848 112 + 1
UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC-ACCCG------CUCAGCUGCUCCCUUCUCGUGCGCAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC
(((((.....(((((......))))))))))((((.............-....(------(......)).......(((..((........))..))).......)))).......... ( -20.20)
>DroEre_CAF1 281837 112 + 1
UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC-ACCCU------CUCAGCUGCUCCUUUCUCGUUCGCAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC
.((((...(((((((......))))).))...))))............-.....------......(((........((.(((((........)))))..))....))).......... ( -17.10)
>DroWil_CAF1 380049 110 + 1
UAUGCCAUUGAUUGCAUAAUUGCAAUGCAUAUGCAUUGGACACGGUGG-UCUUU------UUCAUCCUCUCCAUCUUCC--CUCAGUUUCCUUAUCAACUACGCUUGCAAUUUAAUUGU
(((((........)))))(((((((.((........((((...(((((-.....------.)))))...))))......--...((((........))))..)))))))))........ ( -20.70)
>DroYak_CAF1 286441 112 + 1
UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUUCCUCACUUC-AUCCC------CUCAGCUGCUCCUUCCUCGUUCGUAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC
.((((...(((((((......))))).))...))))............-.....------......(((.......((((.((........)).))))........))).......... ( -15.66)
>DroAna_CAF1 315306 116 + 1
UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUAUACCCGCCAUCCGCCUCGCCAACUUCAGUCU--CUUCUCUCUUCUUCAAUUC-CCGGGCGACUCGUCCUGCAAUUUAAUUGC
(((((...(((((((......))))).))...))))).....((....((..(((((...........--...................-...)))))..))....))........... ( -19.81)
>consensus
UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC_ACCCC______CUCAGCUGCUCCUUUCUCGUUCGCAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC
.((((...(((((((......))))).))...))))..............................................((((((.....((((........))))....)))))) (-13.10 = -13.52 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:49 2006