| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,137,037 – 4,137,143 |
| Length | 106 |
| Max. P | 0.620697 |
| Location | 4,137,037 – 4,137,143 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 91.98 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -19.55 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4137037 106 + 22407834 AAAAAUGUCAUCAAAAGCAUUUAAAAAU-UUGCAAAAUGCGAAAU-------ACGAAGCGGGCAAGUAAUUCAAUUCUGGCCCGGACCACAAGUCAUAAGUAGGCUAAGGCCAC ..((((((........)))))).....(-((((.....))))).(-------((....(((((.((..........)).)))))(((.....)))....)))(((....))).. ( -24.20) >DroSec_CAF1 266511 113 + 1 AAAAAUGUCAUCAAAAGCAUUUAAAAAU-UUGCAAAAUGCGAAAUACGAAAUACGAAACGGGCAAGUAAUUCAAUUCUGGCCCGGACCGCAAGUCAUAAGUAGGCUAAGGCCAC ..((((((........)))))).....(-((((.....)))))........(((....(((((.((..........)).)))))((.(....)))....)))(((....))).. ( -24.90) >DroSim_CAF1 270163 113 + 1 AAAAAUGUCAUCAAAAGCAUUUAAAAAU-UUGCAAAAUGCGAAAUACGAAAUACGAAACGGGCAAGUAAUUCAAUUCUGGCCCGGACCGCAAGUCAUAAGUAGGCUAAGGCCAC ..((((((........)))))).....(-((((.....)))))........(((....(((((.((..........)).)))))((.(....)))....)))(((....))).. ( -24.90) >DroEre_CAF1 280493 106 + 1 AAAAAUGUCAUCAAAGGCAUUUAAAAAU-UUGCAAAAUGCGAAAU-------ACGAAACGGGCAAGUAAUUCAAUUCUGGCCCAGACCGCAAGCCAUAAGUAGGCUAAGGCCAC ..(((((((......))))))).....(-((((.....)))))..-------.......((((.((..........)).)))).(.((...((((.......))))..)).).. ( -24.70) >DroYak_CAF1 285083 107 + 1 AAAAAUGUCAUCAAAAGCAUUUAAAAAUUUUGCAAAAUGCGAAAU-------ACGAAACGGGCUAGUAAUUCAAUUCUGGCCCGGACCGCAAGUCAUAAGUAGGCUAAGGCCAC ..((((((........)))))).....((((((.....))))))(-------((....((((((((..........))))))))((.(....)))....)))(((....))).. ( -29.80) >DroAna_CAF1 313746 106 + 1 AAAAAUGUCAUCAAAAGCAUUUAAAAAU-UUGCAAAAUGCAAAAU-------ACAAAAUGGGCGAAUAAUUCAAUUCUGGCCCAGAACGCAAGUCAUAAGUAGGCUAAGGCUAA ..((((((........)))))).....(-((((.....))))).(-------((....(((((((((......))))..)))))((.(....)))....)))(((....))).. ( -22.00) >consensus AAAAAUGUCAUCAAAAGCAUUUAAAAAU_UUGCAAAAUGCGAAAU_______ACGAAACGGGCAAGUAAUUCAAUUCUGGCCCGGACCGCAAGUCAUAAGUAGGCUAAGGCCAC ..((((((........)))))).......((((.....))))................(((((.((..........)).)))))((.(....))).......(((....))).. (-19.55 = -19.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:48 2006