| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 438,091 – 438,181 |
| Length | 90 |
| Max. P | 0.838029 |
| Location | 438,091 – 438,181 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 87.95 |
| Mean single sequence MFE | -22.06 |
| Consensus MFE | -17.94 |
| Energy contribution | -20.26 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 438091 90 + 22407834 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGAAUGCGACAAUUUCUAUUUGCAAGAAUUGUAAAAAAAAAUCU ....((((((((((......))))..))))))(((((((..(((((...)))))...)))))))((((((.....))))))......... ( -21.70) >DroSec_CAF1 15451 89 + 1 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAAAAAUUCUAAAA-AAAAUCU .....(((((((..(((.((.(....))).((((....)))).)))..))))))).........((((((.....)))))).-....... ( -24.30) >DroSim_CAF1 14605 88 + 1 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAAGAAUUCUGAA--AAAAUCU .....(((((((..(((.((.(....))).((((....)))).)))..))))))).........((..((.....))..))--....... ( -23.80) >DroEre_CAF1 15635 85 + 1 CUUUAUCGCAUCUGAUGAGCCAAAAAUGCGGUUAGAAAUGACGCGAUGGAUGCGACAAUUUCUCUUUGGA---AUUCUAAAAUGCUUU-- .....(((((((((.((.((.......)).((((....)))).)).))))))))).((((((.....)))---)))............-- ( -18.20) >DroYak_CAF1 15151 87 + 1 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGCUGGAUGCGACAAUUUCUCUUUGGA---AUUCUACAAAGUGUCCG .....((((((((........(....)(((((((....)))).))).))))))))......(.(((((..---......))))).).... ( -22.30) >consensus CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAA_AAUUCUAAAA_AAAAUCU .....((((((((((((.((.......)).((((....)))).)))))))))))).........((((((.....))))))......... (-17.94 = -20.26 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:34 2006