Locus 1526

Sequence ID 2L_DroMel_CAF1
Location 4,134,305 – 4,134,405
Length 100
Max. P 0.997007
window2470

overview

Window 0

Location 4,134,305 – 4,134,405
Length 100
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 79.59
Mean single sequence MFE -31.75
Consensus MFE -16.03
Energy contribution -17.55
Covariance contribution 1.52
Combinations/Pair 1.25
Mean z-score -3.25
Structure conservation index 0.50
SVM decision value 2.78
SVM RNA-class probability 0.997007
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4134305 100 + 22407834
ACAUCACUCCUUUCAUAUUUAUCAUUACCGUCUGCUGC--CGUCCUCUCAUCUAUUCAAUGUUUGUAGCCAUGGCAGGAGC--U---G-GUAGGGAGGAGCUGAUGUU
(((((((((((..(...........(((((.((.((((--(((...((((..(((...)))..)).))..))))))).)).--)---)-))))..))))).)))))). ( -34.00)
>DroSec_CAF1 263488 107 + 1
GCAUAACUCCUUCCAUAUUUAUCAUUACCGUCUGCUGUCCUGUCCUCUCGUCUAUUCAAUGUUUGUAGCCAUGGCAGGAUCGCAGGAU-GGAGGAAGGAGCUAAUGUU
((((..((((((((.((........))((((((((.((((((.((....(.((((.........)))))...)))))))).))).)))-)).))))))))...)))). ( -37.00)
>DroSim_CAF1 267132 107 + 1
GCAUCACUCCUUCCAUAUUUAUCAUUACCGUCUGCUGUCCUGUCCUCUCGUCUAUUCAAUGUUUGUAGCCAUGGCAGGAUCGCAGGAU-GGAGGAAGGAGCUGAUGUU
((((((((((((((.((........))((((((((.((((((.((....(.((((.........)))))...)))))))).))).)))-)).)))))))).)))))). ( -42.90)
>DroEre_CAF1 277450 80 + 1
ACAUCACUCCUUCCCUAUUUAUCAUUACCGUCUGCUGC--CGUCCUCUCAUCUAUUCAAUGUUUGCAGUCAUGGC--------------------------UGAUGUU
......................(((((((((..(((((--........................))))).)))).--------------------------))))).. ( -10.46)
>DroYak_CAF1 282008 106 + 1
ACAUCACUCCUUCCAUAUUUAUCAUUACCGUCUGCCAC--CGUCCUCUCAUCUAUUCAAUGUUUGCAGUGAUGGCAGGAUGGCAGAAUCAGAGGGAGGACCUGAUGUU
((((((.(((((((.((........))...(((((((.--..((((.(((((.(((((.....)).)))))))).)))))))))))......)))))))..)))))). ( -34.40)
>consensus
ACAUCACUCCUUCCAUAUUUAUCAUUACCGUCUGCUGC__CGUCCUCUCAUCUAUUCAAUGUUUGUAGCCAUGGCAGGAUCGCAG_AU_GGAGGAAGGAGCUGAUGUU
((((((((((((((................(((((((...........(((.......)))..........)))))))..............)))))))).)))))). (-16.03 = -17.55 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:43 2006