Locus 1522

Sequence ID 2L_DroMel_CAF1
Location 4,128,389 – 4,128,483
Length 94
Max. P 0.588308
window2465

overview

Window 5

Location 4,128,389 – 4,128,483
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 88.16
Mean single sequence MFE -15.62
Consensus MFE -13.04
Energy contribution -12.90
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.83
SVM decision value 0.11
SVM RNA-class probability 0.588308
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4128389 94 - 22407834
AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGGCCACCCACUUUUCUGCCC
.............((((..(((...(((((....)))))....((((((((.......))))..))))))).)))).................. ( -17.00)
>DroSec_CAF1 257346 94 - 1
AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGACCACCCACUUUUCUGCCC
.......(((....(((((..(((((((((....)))))....((........))..))))...)))))....))).................. ( -14.60)
>DroSim_CAF1 261019 94 - 1
AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGGCCACCCACUUUUCUGCCC
.............((((..(((...(((((....)))))....((((((((.......))))..))))))).)))).................. ( -17.00)
>DroEre_CAF1 268500 94 - 1
AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGCCCGCCCACUUUUCUGCCC
....................((((((((((....)))))....(...((((((.......))))))...).))))).................. ( -14.40)
>DroYak_CAF1 275943 94 - 1
AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGCCCGCCCACUUUUCUGCCC
....................((((((((((....)))))....(...((((((.......))))))...).))))).................. ( -14.40)
>DroAna_CAF1 302838 80 - 1
------------CUCUGUGUGUGAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUGGAUCGCAUUUUCCAUACCAUUCUAGUGU--
------------....(((((.((((((((....)))))....((((((((.......))))..)))).....))))))))...........-- ( -16.30)
>consensus
AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGCCCACCCACUUUUCUGCCC
...................(((...(((((....)))))....((((((((.......))))..)))))))....................... (-13.04 = -12.90 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:38 2006