Locus 1521

Sequence ID 2L_DroMel_CAF1
Location 4,125,980 – 4,126,078
Length 98
Max. P 0.740237
window2464

overview

Window 4

Location 4,125,980 – 4,126,078
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 87.88
Mean single sequence MFE -24.80
Consensus MFE -20.48
Energy contribution -20.23
Covariance contribution -0.25
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.83
SVM decision value 0.45
SVM RNA-class probability 0.740237
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4125980 98 + 22407834
CUAUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCACCGCAUAUUUGACGGUACGGUGGAAAUCCUCACCCACUCAGACAAUUUU
.....((((.......))))((((((((.......))))))))(((((((((((....)).))))..(((((......)))))......))))).... ( -22.60)
>DroSec_CAF1 255004 98 + 1
CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGUACGGUGAAAAUCCCCACCCACUCAGACUUUUUU
..(((...........((((((((((((.......)))))))))))).(((((.......)))))..((((........))))......)))...... ( -23.40)
>DroSim_CAF1 258617 98 + 1
CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGUACGGUGAAAGUCCCCACCCACUCAGACUUUUUU
.....((((.......((((((((((((.......)))))))))))).(((((.......))))))))).(((((((............))))))).. ( -24.90)
>DroEre_CAF1 265928 97 + 1
CUGUCCCAUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGCACGGUGGAAAUCCCCAACCACCAAC-UCUUUUG
................((((((((((((.......)))))))))))).(((((.......)))))..(((((..........)))))...-....... ( -26.90)
>DroYak_CAF1 273427 98 + 1
CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGCACUGUGGAAAUCCCCACCCACUCACGUCUUUUU
......(((.......((((((((((((.......)))))))))))).(((((.......)))))...((((......))))......)))....... ( -24.30)
>DroAna_CAF1 300277 92 + 1
CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGUGGCACGGUGGCAAGCUCCCUCCGCCCC------UUC
.((((((((.......((((((((((((.......)))))))))))).(((((.......))))))))).))))...............------... ( -26.70)
>consensus
CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGCACGGUGGAAAUCCCCACCCACUCAGACCUUUUU
...((((((.......((((((((((((.......)))))))))))).(((((.......))))))))).)).......................... (-20.48 = -20.23 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:37 2006