Locus 1520

Sequence ID 2L_DroMel_CAF1
Location 4,124,472 – 4,124,565
Length 93
Max. P 0.707172
window2463

overview

Window 3

Location 4,124,472 – 4,124,565
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.63
Mean single sequence MFE -13.67
Consensus MFE -10.03
Energy contribution -9.98
Covariance contribution -0.05
Combinations/Pair 1.20
Mean z-score -1.61
Structure conservation index 0.73
SVM decision value 0.37
SVM RNA-class probability 0.707172
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4124472 93 - 22407834
CU-------ACUUCCCACCUGC----CUUUCGCGAAUUCAAUUUUCUUG----------------CCCUUUUCGCAAACAAAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU
..-------.............----.....(((((..(((.....)))----------------.....))))).(((.....((((((((((...)))))))))).......)))... ( -12.70)
>DroSec_CAF1 253510 93 - 1
CU-------ACUUUCCACCUGC----CCUUCGCGAAUUCAAUUUUCUUG----------------CCUUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU
..-------.............----.....(((((..(((.....)))----------------.....))))).(((.....((((((((((...)))))))))).......)))... ( -12.70)
>DroSim_CAF1 257138 93 - 1
CU-------ACUUUCCACCUGC----CCUUCGCGAAUUCAAUUUUCUUG----------------CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU
..-------.............----.....(((((..(((.....)))----------------.....))))).(((.....((((((((((...)))))))))).......)))... ( -12.70)
>DroEre_CAF1 264450 93 - 1
CU-------ACUUCCCACCUGC----CUUUCGCGAAUUCAAUUUUCUUG----------------CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCAUAUAGUUGUU
..-------.............----.....(((((..(((.....)))----------------.....)))))....(((((((((((((((...)))))))))).......))))). ( -13.71)
>DroYak_CAF1 271936 93 - 1
CU-------ACUUCCCACCUGC----CUAUCGCGAAUUCAAUAUUCUUG----------------CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAUUUAUU
..-------.............----.....(((((..(((.....)))----------------.....))))).........((((((((((...))))))))))............. ( -12.60)
>DroAna_CAF1 298454 118 - 1
AUUCUGGUGGCUUUGCACCUGUUUUUCUUUUGCGUAUUCAAUUUUCUAGAUGCUCAGCUCCUGCUUCCCUUAAAUAAACACAAUAAGACCUAAUUUGAUUGGGUUAUUCA--UAGUUACA
......((((((.((....(((((......((.((((..(......)..)))).))((....))...........)))))......((((((((...))))))))...))--.)))))). ( -17.60)
>consensus
CU_______ACUUCCCACCUGC____CUUUCGCGAAUUCAAUUUUCUUG________________CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU
...............................(((((..................................))))).........((((((((((...))))))))))............. (-10.03 =  -9.98 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:36 2006