Locus 152

Sequence ID 2L_DroMel_CAF1
Location 437,523 – 437,637
Length 114
Max. P 0.979987
window238

overview

Window 8

Location 437,523 – 437,637
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.02
Mean single sequence MFE -31.03
Consensus MFE -27.87
Energy contribution -27.90
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.90
SVM decision value 1.85
SVM RNA-class probability 0.979987
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 437523 114 - 22407834
------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUGAACGUUCAAUAAAUUU
------((((((...((((((....)))).......(((((..((.....))..)))))))......(((((((((((((((.....)))).))))))...))))).))))))....... ( -31.50)
>DroSec_CAF1 14888 114 - 1
------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUGAAUGUUCAAUAAAUUU
------(((((((..((((((....)))).......(((((..((.....))..)))))))......(((((((((((((((.....)))).))))))...))))))))))))....... ( -32.70)
>DroSim_CAF1 14042 114 - 1
------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUGAACGUUCAAUAAAUUU
------((((((...((((((....)))).......(((((..((.....))..)))))))......(((((((((((((((.....)))).))))))...))))).))))))....... ( -31.50)
>DroEre_CAF1 15067 114 - 1
------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAGCCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUUUAAUAAAUUU
------(((((....((((((....)))).......(((((..((.....))..)))))))...........((((((((((.....)))).))))))...))))).............. ( -28.10)
>DroYak_CAF1 14559 114 - 1
------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCGACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUUCAAUAAAUUU
------((((((...(((((((....(((((........))).))...)))))(....)))...........((((((((((.....)))).)))))).........))))))....... ( -29.50)
>DroAna_CAF1 18341 120 - 1
UUAUUUUUGUAUAAAGCGCCGGCAGCGGCGACUAUGGUUUCUACCAACUUGGUGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUCCAAUAAAUUU
.....(((((.......((((....))))((((((((((((((((.....))))))))).))))........((((((((((.....)))).)))))).........)))..)))))... ( -32.90)
>consensus
______UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUUCAAUAAAUUU
......((((((...((((((....)))).......(((((..((.....))..)))))))...........((((((((((.....)))).)))))).........))))))....... (-27.87 = -27.90 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:33 2006