Locus 1519

Sequence ID 2L_DroMel_CAF1
Location 4,120,866 – 4,120,981
Length 115
Max. P 0.965656
window2462

overview

Window 2

Location 4,120,866 – 4,120,981
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.85
Mean single sequence MFE -39.76
Consensus MFE -16.22
Energy contribution -18.66
Covariance contribution 2.44
Combinations/Pair 1.30
Mean z-score -2.14
Structure conservation index 0.41
SVM decision value 1.58
SVM RNA-class probability 0.965656
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4120866 115 - 22407834
CGUCGCUCUGGAAUGUGUGAUCCUGUUGCAGG--CACUUUUCUUUGAGAAAAUCUGCCGCAGCACUUAUUCGCUUCCAUGGUUGGGGUAUGGCU---UUGCUGGCCCUCCAACCGCACAU
.((.((..(((((.(((......((((((.((--((.(((((.....)))))..))))))))))......)))))))).((((((((...((((---.....)))))))))))))))).. ( -45.00)
>DroSec_CAF1 249932 115 - 1
CGUCGCUCUGGAAUGUGUGAUCCUGUUGGAGG--CACUUAUCCUUGCGAAAAUCUGCCGCAGCACUUAUCCGCUUCCAUGGUUGGGGUAUGGCU---UUGCUGGCCCUCCAACCGCACAU
.((.((..(((((.(((.(((..(((((..((--((.((.((.....)).))..)))).)))))...))))))))))).((((((((...((((---.....)))))))))))))))).. ( -39.90)
>DroEre_CAF1 260388 115 - 1
UAUCGCUCUGGAAAGUGUGAUCCUGCUGCAGA--CACUUAUCUUUGCGAAAGUCUGCCGCAGCACUGAUCCGCUUCCAUGGCUGUGGUAUGGCU---UUGCUGGCCUCCCAACCACACUG
....(((.(((((.(((.((((((((.(((((--(................)))))).))))....)))))))))))).)))((((((..((((---.....)))).....))))))... ( -44.19)
>DroYak_CAF1 267951 115 - 1
CAUCGCUCUGGAAGGUGUGAUCCUUGUGCAGA--CACUUGUCUUUGCGAAAGUCUGCUGCAGCACUAAUUCGCUUCCAUGGCUGUGGUAUGGCU---UUACUGGCAAUCCAGCCGCACUG
....((..(((((((.(((....(((((((((--(..((((....))))..)))))).))))))).....).)))))).(((((.(((...(((---.....))).)))))))))).... ( -36.50)
>DroAna_CAF1 293360 111 - 1
-----CUCAAGAUUGACGAAUU-UUUUGGAAGAGGACUUG---GAAGGGAAGUAUUCCUUAUUGCUGACCCUCUUCCAAGGGUAGGAGGAGGCAACCUCAGACGUUGUCCAACCACACAA
-----.........(((((...-((((((((((((..(..---(.(((((.....)))))....)..).))))))))))))((..((((......))))..)).)))))........... ( -33.20)
>consensus
CAUCGCUCUGGAAUGUGUGAUCCUGUUGCAGG__CACUUAUCUUUGCGAAAGUCUGCCGCAGCACUGAUCCGCUUCCAUGGCUGGGGUAUGGCU___UUGCUGGCCCUCCAACCGCACAG
........(((((.(((.....((((.(((((....(..........)....))))).))))........)))))))).((((((((...((((........))))))))))))...... (-16.22 = -18.66 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:35 2006