Locus 1517

Sequence ID 2L_DroMel_CAF1
Location 4,116,087 – 4,116,177
Length 90
Max. P 0.743345
window2460

overview

Window 0

Location 4,116,087 – 4,116,177
Length 90
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.95
Mean single sequence MFE -27.63
Consensus MFE -16.02
Energy contribution -15.67
Covariance contribution -0.36
Combinations/Pair 1.21
Mean z-score -1.86
Structure conservation index 0.58
SVM decision value 0.46
SVM RNA-class probability 0.743345
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4116087 90 + 22407834
AGGCGGUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG-CAUGCAAUUUGACUU----AAGUGGCAGUGCUGCACUCCGGCAC--------
.((.((((((..((.((((((..((((((..(...(((............-..)))...)..))))----))))))))))..)))))))).....-------- ( -27.24)
>DroPse_CAF1 380121 98 + 1
AGUCGUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAGCCAUGCAAUUUGACUU----AAGUGGCAAUGCAGG-CGACGUCGCUCGGCUCU
.((((((((((....((((((..((((((((..((((............))))..))))))))...----..))))))))))).)-))))(((....)))... ( -32.80)
>DroGri_CAF1 348285 86 + 1
--UGGUUGCAUAAUGUGCCAGUUCUCAUUUGAUUGGCACCAAAUUUAUUG-CAUGCAAUUUGACUCGGCAAAGUGGCAGCUCCGG----CAAC----------
--..(((((.....(((((((((.......)))))))))..........(-(.(((..((((......))))...)))))....)----))))---------- ( -24.40)
>DroYak_CAF1 259722 95 + 1
AGGCGUUUCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG-CAUGCAAUUUGACUU----AAGUGGCAGUGCUGCACUUCUGCACUCCG---G
..(((((....)))))(((((..((((((..(...(((............-..)))...)..))))----)))))))(((((.........)))))...---. ( -23.54)
>DroAna_CAF1 289091 88 + 1
GGGCAUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG-CAUGCAAUUUGACUU----AAGUGGCAGUGCCGU----CGAC---GCA---G
.((((((((.....((((((.(((......)))))))))...(((((...-((.......))...)----)))).))))))))..----....---...---. ( -25.00)
>DroPer_CAF1 382099 98 + 1
AGUCGUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAGCCAUGCAAUUUGACUU----AAGUGGCAAUGCAGG-CGACGUCGCUCGGCUCU
.((((((((((....((((((..((((((((..((((............))))..))))))))...----..))))))))))).)-))))(((....)))... ( -32.80)
>consensus
AGGCGUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG_CAUGCAAUUUGACUU____AAGUGGCAGUGCAGG_C__CGAC_C_C_G____
...((((((.....((((((.(((......)))))))))(((((((((....))).)))))).............))))))...................... (-16.02 = -15.67 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:33 2006