Locus 1516

Sequence ID 2L_DroMel_CAF1
Location 4,113,289 – 4,113,383
Length 94
Max. P 0.848698
window2459

overview

Window 9

Location 4,113,289 – 4,113,383
Length 94
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.40
Mean single sequence MFE -22.92
Consensus MFE -20.04
Energy contribution -19.85
Covariance contribution -0.19
Combinations/Pair 1.10
Mean z-score -1.72
Structure conservation index 0.87
SVM decision value 0.78
SVM RNA-class probability 0.848698
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4113289 94 + 22407834
AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCGGCAAGGAUUUCGUACGAAAAUCAAA
.......(((((((((......)))))).(((((.....))))))))..(((((..(.....----.)..)))))..((.((((....)))).))... ( -23.90)
>DroSec_CAF1 242377 94 + 1
AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCGGCAAGGAUUUCGUACGAAAAUGAAA
((((...(((((((((......)))))).(((((.....))))))))..(((((..(.....----.)..)))))..))))(((((......))))). ( -24.40)
>DroSim_CAF1 245725 76 + 1
AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCGGCAAGGA------------------
.(((...(((((((((......)))))).(((((.....))))))))..(((((..(.....----.)..)))))..)))------------------ ( -21.80)
>DroYak_CAF1 256936 85 + 1
AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAUUCGGCAAGGAUUUCGUACA---------
((((...(((((((((......)))))).(((((.....))))))))..((((((.......----...))))))..))))........--------- ( -23.40)
>DroAna_CAF1 285966 81 + 1
----AUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCAACAAGGACAAAGUUAA---------
----...(((((((((......)))))).(((((.....)))))))).((((......))))----...(((......)))........--------- ( -19.90)
>DroPer_CAF1 378943 89 + 1
AACAUCAGCGGACAUCAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUUUCUAAAAGUCAGCAAAAAGGACGAGCC---------
.......(((((((((......)))))).(((((.....)))))))).((((((((....)))).....(((.........))).))))--------- ( -24.10)
>consensus
AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU____AAAGUCGGCAAGGAUUUCGUACA_________
.......(((((((((......)))))).(((((.....))))))))..(((((..(..........)..)))))....................... (-20.04 = -19.85 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:32 2006