Locus 1515

Sequence ID 2L_DroMel_CAF1
Location 4,106,666 – 4,106,759
Length 93
Max. P 0.867199
window2458

overview

Window 8

Location 4,106,666 – 4,106,759
Length 93
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 78.53
Mean single sequence MFE -23.90
Consensus MFE -17.38
Energy contribution -17.88
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.73
SVM decision value 0.85
SVM RNA-class probability 0.867199
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4106666 93 + 22407834
GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGUCCA---GGCAGC-------GAGCACGCACCAG-CC----AAGGCAUAG---GG
((((((........((((((.((((....))))..))))))............(((((...---.)).))-------).)))))).((.(-(.----...))...)---). ( -23.60)
>DroPse_CAF1 368679 107 + 1
GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGACCAAGAGGCAGCCCAGGCAGCGCACGCACCCA-ACAAAAGAGCGGCCG---GG
(((((((((.....((((((.((((....))))..)))))).............((..((....))..))......))))))))).(((.-.(........)...)---)) ( -27.00)
>DroGri_CAF1 336973 99 + 1
GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGAGCA-------ACAAAGGC-GCGCACGCACAA-CACAAAACCGAGUCAA---GU
((((((((......((((((.((((....))))..)))))).................((.-------......))-))))))))....-................---.. ( -21.60)
>DroEre_CAF1 244723 97 + 1
GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGUCGA---GGCAGC-------AAGCACGCACCAG-CCAAGGCAAGCAUAG---GG
((((((........((((((.((((....))))..))))))............(((((...---.)).))-------).))))))....(-(....))........---.. ( -23.80)
>DroAna_CAF1 279102 94 + 1
GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGUCCA---GGCAGC-------CAGCACGCACCAA-CA------AGCAGACGGAGG
((((((........((((((.((((....))))..))))))............(((.....---.)))..-------..)))))).((..-(.------....)..))... ( -20.40)
>DroPer_CAF1 370951 107 + 1
GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGACCAAGAGGCAGCCCAGGCAGCGCACGCACCCA-ACAAAAGAGCGGCAG---GG
(((((((((.....((((((.((((....))))..)))))).............((..((....))..))......))))))))).(((.-.(........)...)---)) ( -27.00)
>consensus
GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGACCA___GGCAGC_______GAGCACGCACCAA_ACAAAACAGGCACAG___GG
((((((........((((((.((((....))))..))))))............(((.........)))...........)))))).......................... (-17.38 = -17.88 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:31 2006