Locus 1514

Sequence ID 2L_DroMel_CAF1
Location 4,106,499 – 4,106,592
Length 93
Max. P 0.908597
window2457

overview

Window 7

Location 4,106,499 – 4,106,592
Length 93
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 88.45
Mean single sequence MFE -24.54
Consensus MFE -20.84
Energy contribution -21.40
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.76
Structure conservation index 0.85
SVM decision value 1.06
SVM RNA-class probability 0.908597
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4106499 93 - 22407834
GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGAUGACUUUUCAUUUUACGCAAACGGUAU--UUCACGUUGCGUGUU----CACGCAGAAUCCCU
........(((((((((((((.(((....))).)))))............(((((((.((....--....)))))))))..----......)))))))) ( -26.40)
>DroSec_CAF1 235716 95 - 1
GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUUACGCAAACGGUACUUUUCUCGUUGCGUGUU----UACGCAGAAUCCCU
........(((((((((((((.(((....))).)))))............(((((((.(((........))))))))))..----......)))))))) ( -27.90)
>DroSim_CAF1 238962 95 - 1
GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUUACGCAAGCGGUAUUUUUCUCGUUGCCUGUU----AACGCAGAAUCCCU
........(((((((((((((.(((....))).)))))...............((.(((((((..........)))).)))----...)).)))))))) ( -23.70)
>DroEre_CAF1 244552 97 - 1
GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGAAGACUUUUCAUUUAUCUCAAACGCUAUUU--UUUGUUGCGUGUUUAUUUACGCAGAAUCCGU
..........((((((.((((.(((....))).)))).............................--.....((((((......)))))))))))).. ( -19.00)
>DroYak_CAF1 250012 99 - 1
GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUAACUCAAACGGUAUUUUUUUUGUUGCGUGUUUAUUCACGCAGAAUCCGC
........(..((.(((((((.(((....))).))))))).))..)............(((.((((.......((((((......))))))))))))). ( -25.71)
>consensus
GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUUACGCAAACGGUAUUUUUCUCGUUGCGUGUU____CACGCAGAAUCCCU
........(((((((((((((.(((....))).)))))...................................((((((......)))))))))))))) (-20.84 = -21.40 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:30 2006