Locus 1512

Sequence ID 2L_DroMel_CAF1
Location 4,103,838 – 4,103,933
Length 95
Max. P 0.820638
window2455

overview

Window 5

Location 4,103,838 – 4,103,933
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 87.02
Mean single sequence MFE -21.71
Consensus MFE -19.56
Energy contribution -19.40
Covariance contribution -0.16
Combinations/Pair 1.11
Mean z-score -1.57
Structure conservation index 0.90
SVM decision value 0.68
SVM RNA-class probability 0.820638
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4103838 95 + 22407834
CAGUUCAGGUCUUCAGUAUUCUGGGCCUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCCCAAAA
.......((.((...((.....(((((........))))).............((((((((.....)))))).)).......))..)).)).... ( -22.90)
>DroSec_CAF1 233104 95 + 1
CAGUUCAGGUCUCCAGUAUUCUGGGCUUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCCCAAAA
.....................((((((..((.((((((...............)))))).....(((((..........)))))))))))))... ( -21.36)
>DroSim_CAF1 236398 95 + 1
CAGUUCAGGUCUCCAGUAUUCUGGGCUUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCAACAAAAACGUGGCCCAAAA
..(((.((((..((((....))))))))))).((.((((..............((((((((.....)))))).)).((......))))))))... ( -24.20)
>DroEre_CAF1 241897 85 + 1
----------GUGCAGUAUUCUGGGCUUAACAUGCAGCCCCGCAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCUCAAAA
----------((((........(((((........)))))((((((((................)))))))).)))).................. ( -21.29)
>DroYak_CAF1 247299 80 + 1
---------------GUAUUCUGGGCUUAACAUGCAGCCUCGCAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCUCAAAA
---------------......((((((..((.(((......))).........((((((((.....)))))).)).........))))))))... ( -18.80)
>consensus
CAGUUCAGGUCUCCAGUAUUCUGGGCUUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCCCAAAA
.....................((((((..((.(((...........)))....((((((((.....)))))).)).........))))))))... (-19.56 = -19.40 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:28 2006