Locus 1510

Sequence ID 2L_DroMel_CAF1
Location 4,090,074 – 4,090,170
Length 96
Max. P 0.897617
window2450 window2451

overview

Window 0

Location 4,090,074 – 4,090,170
Length 96
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.72
Mean single sequence MFE -22.80
Consensus MFE -15.07
Energy contribution -17.10
Covariance contribution 2.03
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4090074 96 + 22407834
UGUCUAAGUGUGUGUGCUCUUAUAUGC--------------UCUG----AAU----AUAUAUUUUGAAUAUCUACACCGAACA--CAAAGUCCGAUAACAAUAGGCACACUCACUUCUCA
.....(((((.(((((((..(((((..--------------....----.))----)))..................((.((.--....)).)).........))))))).))))).... ( -18.20)
>DroSec_CAF1 219490 120 + 1
UGUCUAAGUGUGAGUGCUCUAGUAGGCGAAUAAUUAUUUUCUCUAUGCUAAUACUCAUACUUUUUGAAUAUCUUCACCGAACACUCAAGGUCCGAUAACAAUGGGCACACUCACUUCUCA
((((((((((((((((.....(((((.(((........)))))))).....)))))))))).......((((...(((..........)))..))))....))))))............. ( -25.80)
>DroSim_CAF1 222376 120 + 1
UGUCCAAGUGUGUGCGCUCUAGUAGGCGAAUAAUUAUUUUCUCUAUGCUAAUACUCAUACUUUUUGAAUAUCUUCACCGAACACACAAGGUCCGAUAACAAUGGGCACACUCACUUCUCA
.....(((((.(((.(((((((((((.(((........))).)).)))))..................((((...(((..........)))..)))).....)))).))).))))).... ( -24.40)
>consensus
UGUCUAAGUGUGUGUGCUCUAGUAGGCGAAUAAUUAUUUUCUCUAUGCUAAUACUCAUACUUUUUGAAUAUCUUCACCGAACAC_CAAGGUCCGAUAACAAUGGGCACACUCACUUCUCA
.....(((((.((((((((..(((((.(((........))))))))......................((((...(((..........)))..)))).....)))))))).))))).... (-15.07 = -17.10 +   2.03)

alignment

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secondary structure

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dotplot

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Window 1

Location 4,090,074 – 4,090,170
Length 96
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.72
Mean single sequence MFE -28.83
Consensus MFE -22.80
Energy contribution -22.81
Covariance contribution 0.01
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.79
SVM decision value 1.00
SVM RNA-class probability 0.897617
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4090074 96 - 22407834
UGAGAAGUGAGUGUGCCUAUUGUUAUCGGACUUUG--UGUUCGGUGUAGAUAUUCAAAAUAUAU----AUU----CAGA--------------GCAUAUAAGAGCACACACACUUAGACA
....(((((.((((((((...(((....)))..((--(((((...(((.((((.....)))).)----)).----..))--------------)))))..)).)))))).)))))..... ( -25.30)
>DroSec_CAF1 219490 120 - 1
UGAGAAGUGAGUGUGCCCAUUGUUAUCGGACCUUGAGUGUUCGGUGAAGAUAUUCAAAAAGUAUGAGUAUUAGCAUAGAGAAAAUAAUUAUUCGCCUACUAGAGCACUCACACUUAGACA
((((..((((((((((......((((((((((....).))))))))).((((((((.......)))))))).)).(((.(((........)))..))).....)))))))).)))).... ( -30.30)
>DroSim_CAF1 222376 120 - 1
UGAGAAGUGAGUGUGCCCAUUGUUAUCGGACCUUGUGUGUUCGGUGAAGAUAUUCAAAAAGUAUGAGUAUUAGCAUAGAGAAAAUAAUUAUUCGCCUACUAGAGCGCACACACUUGGACA
....(((((.((((((.(....((((((((((....).))))))))).((((((((.......))))))))....(((.(((........)))..)))...).)))))).)))))..... ( -30.90)
>consensus
UGAGAAGUGAGUGUGCCCAUUGUUAUCGGACCUUG_GUGUUCGGUGAAGAUAUUCAAAAAGUAUGAGUAUUAGCAUAGAGAAAAUAAUUAUUCGCCUACUAGAGCACACACACUUAGACA
....(((((.((((((.((((.(((((((((.......))))))))).)))........((((((((((...................))))))..)))).).)))))).)))))..... (-22.80 = -22.81 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:24 2006