| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 437,136 – 437,247 |
| Length | 111 |
| Max. P | 0.822752 |
| Location | 437,136 – 437,247 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.41 |
| Mean single sequence MFE | -27.37 |
| Consensus MFE | -26.10 |
| Energy contribution | -26.30 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 437136 111 - 22407834 A--------AAAAGCUUUUCAAAAGCAAUUAUAUUUAAGCUGAUUUCCAUGCGCACCUUGGUCUC-GGCUUAGGUGAUCUGGAGAACAGGCUCAGACACAUACUUUAUGCCCGAUCACAG .--------....((((.....))))........(((((((((...(((.........)))..))-)))))))((((((((.....))(((..(((.......)))..))).)))))).. ( -26.30) >DroSec_CAF1 14528 111 - 1 A--------AAAAGCUUUUCAAAAGCAAUUAUAUAUAAGCCGAUUUCCAUGCGCACCUUGGACCC-GGCUAAGGUGAUCUGGAGAACAGGCUCAGACACACACUUUAUGACCGAUCGCAG .--------....((((.....))))...........((((..((((((....((((((((....-..))))))))...))))))...))))............................ ( -26.80) >DroSim_CAF1 13649 111 - 1 A--------AAAAGCUUUUCAAAAGCAAUUAUAUAUAAGCCGAUUUCCAUGCGCACCUUGGACCC-GGCUAAGGUGAUCUGGAGAACAGGCUCAGACACACACUUUAUGACCGUUCGCAG .--------....((((.....))))............((.....((((....((((((((....-..))))))))...))))((((.((.(((.............))))))))))).. ( -26.92) >DroEre_CAF1 14674 111 - 1 A--------AAAAGCUUUUGAAAAGCAAUUAUAUUUAAGCCGAUUUCCAUGCGCACCUUGGACCC-GGCUAAGGUGAUCUGGAGAACAGGCUCAGACACACACUUUAUGCCCGAUCACAG .--------....((((.....)))).......(((.((((..((((((....((((((((....-..))))))))...))))))...)))).)))........................ ( -27.40) >DroYak_CAF1 14160 111 - 1 A--------AAAAGCUUUUCAAAAGCAAUUAUAUUUAAGCCGAUUUCCAUGCGCACCUUGGACCC-GGCUAAGGUGAUCUGGAGAACAGGCUCAGACACACACUUUAUGCCCGAUCACAG .--------....((((.....)))).......(((.((((..((((((....((((((((....-..))))))))...))))))...)))).)))........................ ( -27.40) >DroAna_CAF1 17879 120 - 1 AAAAAUAGAAAUAGCUUUUGAAAAGCAAUUAUAUCUAAGCCGAUUUCCAUGAGCACCUUGGACCAGGGCUAAGGUAAUCUGGAGAACAGGCUCAGUGCCAGACUUAAUGCCAGAUCACCG .......((....((((.....)))).((((..(((.....(.((((((.((..(((((((.(....))))))))..)))))))).).(((.....))))))..))))......)).... ( -29.40) >consensus A________AAAAGCUUUUCAAAAGCAAUUAUAUUUAAGCCGAUUUCCAUGCGCACCUUGGACCC_GGCUAAGGUGAUCUGGAGAACAGGCUCAGACACACACUUUAUGCCCGAUCACAG .............((((.....))))...........((((..((((((....((((((((.(....)))))))))...))))))...))))............................ (-26.10 = -26.30 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:32 2006