Locus 1509

Sequence ID 2L_DroMel_CAF1
Location 4,089,335 – 4,089,445
Length 110
Max. P 0.572891
window2449

overview

Window 9

Location 4,089,335 – 4,089,445
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 93.94
Mean single sequence MFE -22.37
Consensus MFE -19.09
Energy contribution -19.87
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.97
Structure conservation index 0.85
SVM decision value 0.08
SVM RNA-class probability 0.572891
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4089335 110 + 22407834
AUUAAAGUUUAUAGUUUGGUAAAGACCAUUGAACUUUUGCAUUCAAAAUGUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUGUUCUACCUUUAAUAUU
..(((((((((.(((((((.((((.((((.((((...((((..(((......))).)))).))))))))...)))))))))))..)))))))))................ ( -24.00)
>DroSec_CAF1 218770 110 + 1
AUUAAAGUUUAUAGUUGGUAAAAGACCAUUGAACUCUUGCGUUCAAAAUGUAUUGUUGCAUGUUUAUGGAAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUU
(((((((........((((.....))))((((((......)))))).(((((....)))))((..((((((((((...........))))))))))..)))))))))... ( -19.50)
>DroSim_CAF1 221626 110 + 1
AUUAAAGUUUAUAGUUGGGAAAAGACCAUUGAACUCUUGCAUUCAACAUUUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUU
...((((((((...((((((((...((((.((((...((((..(((......))).)))).))))))))...)))))))).....))))))))................. ( -23.60)
>consensus
AUUAAAGUUUAUAGUUGGGAAAAGACCAUUGAACUCUUGCAUUCAAAAUGUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUU
...((((((((...((((((((...((((.((((...((((..(((......))).)))).))))))))...)))))))).....))))))))................. (-19.09 = -19.87 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:22 2006