Locus 1506

Sequence ID 2L_DroMel_CAF1
Location 4,085,440 – 4,085,536
Length 96
Max. P 0.656800
window2445

overview

Window 5

Location 4,085,440 – 4,085,536
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.89
Mean single sequence MFE -23.03
Consensus MFE -16.78
Energy contribution -17.06
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -2.08
Structure conservation index 0.73
SVM decision value 0.26
SVM RNA-class probability 0.656800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4085440 96 + 22407834
A--AAAAGGAAACUUUCUAAGGACAUGUGUGGGUGUGUGUGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC
.--....(((((..((((..(((...((..(((((..(((.((((((.....)))))).)))..)))))...))..))).....))))..)))))... ( -27.90)
>DroSec_CAF1 214897 90 + 1
AAUAAAAGGAAACUUUGUAAGGACAUGUGU------G--UGUGUGGGAAUUUUCCGCAAAUACGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC
.......(((((((((.((((((.((((((------.--..(((((((...))))))).)))))).))))))............)))))..))))... ( -24.72)
>DroSim_CAF1 217821 92 + 1
AAUAAAAGGAAACUUUCUAAGGACAUGUGU------GUGUGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC
.......(((((..(((((((((.((((((------.....((((((.....)))))).)))))).))))).............))))..)))))... ( -21.11)
>DroEre_CAF1 223350 95 + 1
AAUA-AAGGAAACUUUCUAAGGACAUGUGUG--UGUGGGUGUAUAGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC
....-..(((((..(((((((((.((((((.--((((((.............)))))).)))))).))))).............))))..)))))... ( -21.33)
>DroYak_CAF1 228426 94 + 1
AAUAAAAGGAAACUUUCUAAGGACAUGUGUG--UGUG--UGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC
.......(((((..(((((((((....((..--(((.--..((((((.....)))))).)))..))))))).............))))..)))))... ( -20.11)
>consensus
AAUAAAAGGAAACUUUCUAAGGACAUGUGUG__UGUG_GUGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC
....((((....)))).((((((.((((((...........(((((((...))))))).)))))).))))))........((((......)))).... (-16.78 = -17.06 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:18 2006