Locus 1505

Sequence ID 2L_DroMel_CAF1
Location 4,061,819 – 4,061,920
Length 101
Max. P 0.965642
window2444

overview

Window 4

Location 4,061,819 – 4,061,920
Length 101
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 94.22
Mean single sequence MFE -22.67
Consensus MFE -17.67
Energy contribution -17.87
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -3.85
Structure conservation index 0.78
SVM decision value 1.58
SVM RNA-class probability 0.965642
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4061819 101 - 22407834
AAGAUU---AAAGGGAAAAGGAA-CAGGAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA
....((---(((.((.....(((-((......((((....))))....(((((.....)))))....))))).)).))))).(((((...))))).......... ( -21.70)
>DroSec_CAF1 194089 99 - 1
AAGAUA---AAAGGGAAAAGG---CGGCAGCAUAAGGAAACUUCAACAGUUGCUCACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA
......---............---.(((((((((((....))).....(((((.....)))))...))).))))).......(((((...))))).......... ( -20.70)
>DroSim_CAF1 195615 99 - 1
AAGAUA---AAAGGGAAAAGG---CGGCAGCAUAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA
......---............---.(((((((((((....))).....(((((.....)))))...))).))))).......(((((...))))).......... ( -20.70)
>DroEre_CAF1 202287 99 - 1
AAGAUA---AAAGGGAAAAGG---CAGCAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA
......---..........((---(((((...((((....))))....(((((.....)))))....)).))))).......(((((...))))).......... ( -24.10)
>DroYak_CAF1 207272 99 - 1
AAGAUA---AAAGGGAAAAGG---CAGCAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA
......---..........((---(((((...((((....))))....(((((.....)))))....)).))))).......(((((...))))).......... ( -24.10)
>DroAna_CAF1 239324 105 - 1
AAGAUAAAAAAAGGCAAAAGCACCCAACAGCAGGAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA
............((((((.((........)).((((....))))....(((((.....)))))......)))))).......(((((...))))).......... ( -24.70)
>consensus
AAGAUA___AAAGGGAAAAGG___CAGCAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA
............((.(((..............((((....))))....(((((.....)))))......))).)).......(((((...))))).......... (-17.67 = -17.87 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:17 2006