Locus 1503

Sequence ID 2L_DroMel_CAF1
Location 4,060,783 – 4,060,899
Length 116
Max. P 0.927638
window2436

overview

Window 6

Location 4,060,783 – 4,060,899
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 83.62
Mean single sequence MFE -19.66
Consensus MFE -14.43
Energy contribution -15.39
Covariance contribution 0.96
Combinations/Pair 1.14
Mean z-score -2.26
Structure conservation index 0.73
SVM decision value 1.18
SVM RNA-class probability 0.927638
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4060783 116 + 22407834
AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACAUUGCUCUAUACCCAUCUCGCUCGUACUACCCAUAGCUAUCUCUUUCUGCAAACCCAUAGCUAUCUCU
....((((((.....(((((.......)))))...(((..((.....)).)))............)))))).........((((((((................)))))))).... ( -20.49)
>DroSec_CAF1 193075 114 + 1
AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC--UACCCAUCUCGCUCGUACUACCCAUAGCUAUCUCUUUCUGCGAACCCAUAGCUAUCUCU
....((((((.....(((((.......)))))...((....))............--........)))))).........((((((((....(((...)))...)))))))).... ( -20.10)
>DroSim_CAF1 194578 114 + 1
AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC--UACCCAUCUCGCUCGUACUACCCGUAGCUAUCUCUUUCUGCGAACACAUAGCUAUCUCU
....((((((.....(((((.......)))))...((....))............--........)))))).........((((((((....(((...)))...)))))))).... ( -20.40)
>DroEre_CAF1 201238 114 + 1
AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC--CACCUAUCUCGCUCUUACUACCCAUAGCUAUCUCUCUCAGUGAACCCAUAGCCAUCUCU
..((((((((.....(((((.......)))))...((....))............--........))))))))..........(((((...((.....))....)))))....... ( -19.50)
>DroAna_CAF1 238631 91 + 1
AAAAGAGCGACACCAACUACCGAAAAUGUUGUCAUGCAUUUGCUCUACUUUUCUC--UAUCUGUCUCUUUCGCA---------GCUAGCU--------------AUGGCUGUCUCU
.(((((((((((.((...........)).))))..((....))............--.....).)))))).(((---------((((...--------------.))))))).... ( -17.80)
>consensus
AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC__UACCCAUCUCGCUCGUACUACCCAUAGCUAUCUCUUUCUGCGAACCCAUAGCUAUCUCU
....((((((.....(((((.......)))))...((....))......................)))))).........((((((((................)))))))).... (-14.43 = -15.39 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:09 2006