Locus 1500

Sequence ID 2L_DroMel_CAF1
Location 4,052,853 – 4,052,953
Length 100
Max. P 0.632745
window2432

overview

Window 2

Location 4,052,853 – 4,052,953
Length 100
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 91.12
Mean single sequence MFE -27.43
Consensus MFE -20.75
Energy contribution -22.49
Covariance contribution 1.75
Combinations/Pair 1.09
Mean z-score -1.79
Structure conservation index 0.76
SVM decision value 0.20
SVM RNA-class probability 0.632745
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4052853 100 + 22407834
GGUUGAAUUUUCGGAAGAUUGACUGAGUUAAGAGUGGCAUGAAGUUGGGCAAUACCUAGUGGAAAAUUGCCAUUCUCUUACUUUUUAGUUGAAGAUUUUC-------
....((((((((....((((((..((((..(((((((((.....(((((.....)))))........)))))))))...)))).))))))))))))))..------- ( -24.52)
>DroSec_CAF1 185283 107 + 1
GGUUGAAUUUUCGGAAGAUUGGCUGAGUUAAAAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCCAUGCUAUUACUUUUUAGUUGAAGAUUUUCAGCUUGG
(((((((...((....))(..((((((.....(((((((((.((((.(....).((....))..))))..)))))))))....))))))..).....)))))))... ( -29.10)
>DroSim_CAF1 186708 107 + 1
GGUUGAAUUUACGGAAGAUUGACUGAGUUAAGAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCCAUGCUAUUACUUUUUAGUUGAAGAUUUUCAGCUUGG
(((((((....(....).(..((((((..((((((((((((.((((.(....).((....))..))))..))))))))).)))))))))..).....)))))))... ( -29.10)
>DroYak_CAF1 198167 107 + 1
GGGUGAAUUUUCGGAAGAUUGACUGAGUUAAAAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCUUUGCUUUUAACUUUUAGUUGAAGAUUUUCAGCUUGG
((.((((...((....))(..((((((((((((((((((........(....).((....)).....))))..)))))))))))..)))..).....)))).))... ( -27.00)
>consensus
GGUUGAAUUUUCGGAAGAUUGACUGAGUUAAAAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCCAUGCUAUUACUUUUUAGUUGAAGAUUUUCAGCUUGG
(((((((...((....))(..((((((.(((((((((((.....(((((.....)))))........))))..)))))))...))))))..).....)))))))... (-20.75 = -22.49 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:06 2006