Locus 15

Sequence ID 2L_DroMel_CAF1
Location 62,576 – 62,669
Length 93
Max. P 0.623313
window25

overview

Window 5

Location 62,576 – 62,669
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.69
Mean single sequence MFE -30.33
Consensus MFE -16.87
Energy contribution -16.98
Covariance contribution 0.11
Combinations/Pair 1.32
Mean z-score -2.04
Structure conservation index 0.56
SVM decision value 0.18
SVM RNA-class probability 0.623313
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 62576 93 + 22407834
UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUUGCCGAGGCAG--------UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC----CUUCAA
................(((((((...(((((((((((.(((--------(((((...(....).....))))..))))...))))))))))))))----)))).. ( -32.70)
>DroSec_CAF1 35344 93 + 1
UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUCGCCGAGGCCG--------UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC----CUUCAA
................(((((((...(((..((((((((((--------.((((...(....).....))))....)))).))))))..))))))----)))).. ( -29.00)
>DroSim_CAF1 37644 93 + 1
UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUCGCCGAGGCCG--------UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC----CUUCAA
................(((((((...(((..((((((((((--------.((((...(....).....))))....)))).))))))..))))))----)))).. ( -29.00)
>DroEre_CAF1 41694 93 + 1
UUAUUGCUUAAGCUUGGGAGGAUUCAGUUUUGCCGAGGCCG--------UUGCAAUGCGGAAGAAAUGUGUAUAACCGGUACUUGGCAGAACAUC----CUUCAA
.....((....))...(((((((...(((((((((((((((--------.((((...(....).....))))....)))).))))))))))))))----)))).. ( -35.00)
>DroYak_CAF1 35047 93 + 1
UUAUUGCCUAAGCUUGGGAGGAUUGCGAUUCGCCGAGGCCG--------UUGCAAUGCGGAAGAGCUGUGUAUAACCGGUACUUGGCAGAACAUC----CUUCAA
................(((((((...(.(((((((((((((--------.((((..((......))..))))....)))).)))))).)))))))----)))).. ( -28.10)
>DroPer_CAF1 47511 98 + 1
UAACUGCCA-------CCAGGAUCCAGUUCCGCUUAAUCGGGAGUCGACUCGCAAUGCGGAAGAAACUUACGCUGCUGAUUCUUGGCAGAACCUUACUGCGUCAA
...((((((-------..(((((((((((((((.....((((......))))....)))))..........))))..))))))))))))................ ( -28.20)
>consensus
UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUCGCCGAGGCCG________UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC____CUUCAA
...(((((...((((.((.(((......))).)).))))...........((((...(....).....))))............)))))................ (-16.87 = -16.98 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:19 2006