| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,021,606 – 4,021,712 |
| Length | 106 |
| Max. P | 0.893099 |
| Location | 4,021,606 – 4,021,712 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.31 |
| Mean single sequence MFE | -23.81 |
| Consensus MFE | -16.95 |
| Energy contribution | -17.53 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.893099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4021606 106 - 22407834 --UGUUAC-CCUUAAACUUUUUUUUUUUUUGGUUCUUCAGAGCCAACGGCCAACCAAGCGGAAGUUGAUUUAUUUCAGUCGACUCUUCGCUUCUUCAAUUCGUUUUUUG --......-....((((...........(((((((....))))))).((....))(((((((((((((((......)))))))).))))))).........)))).... ( -23.90) >DroSec_CAF1 155062 101 - 1 --UAUUCC-ACUCAAACUUUU-----UUUUGGUUCUUCAGAGCCAACGGCCAACCAAGCGGAAGUUGAUUUAUUUCAGUCGACUCUUCGCUUCUUCAAUUCGUUUUUUG --......-....((((....-----..(((((((....))))))).((....))(((((((((((((((......)))))))).))))))).........)))).... ( -24.00) >DroSim_CAF1 159475 101 - 1 --UGUUAC-CCUUAAACUUUU-----UUUUGGUUCUUCAGAGCCAACGGCCAACCAAGCGGAAGUUGAUUUAUUUCAGUCGACUCUUCGCUUCUUCAAUUCGUUUUUUG --......-....((((....-----..(((((((....))))))).((....))(((((((((((((((......)))))))).))))))).........)))).... ( -23.90) >DroEre_CAF1 161559 100 - 1 --UAUUCC-CUUUAAACUAUU----UUUUUGGUUCUUC-GAGUCAACGGCCAACCAAGCGGAAGUUGAUUUAUUUCAGUCGACUCUUCGCUUCUUCAAUUCGUUU-UUG --......-....((((....----...((((((..((-(......)))..))))))(((((((((((((......)))))))).)))))...........))))-... ( -20.90) >DroYak_CAF1 165967 103 - 1 --UGUUCC-CUUUCGACUUUUU---UUUUUGGUUCUUUAGUGCGAGAGACCAACGAAGCGGAAGUUGAUUUAUUUCAGUCGACUCUUCGCUUCUUCAAUUCGUUUUUUG --......-....(((......---...(((((.((((......))))))))).((((((((((((((((......)))))))).))))))))......)))....... ( -26.30) >DroAna_CAF1 180117 94 - 1 CCUAUUCUGAUUCAAAA--U-----UGUUGGGUUCUUUGGACUCAGCGGCCAGCGAAGCGGAAGUUGAUUUAUUUUAGGCGACUGGCGGCUUCUA--------UUUUUC ((...............--.-----(((((((((.....)))))))))(((((((.(((....))).............)).)))))))......--------...... ( -23.84) >consensus __UAUUCC_CCUUAAACUUUU____UUUUUGGUUCUUCAGAGCCAACGGCCAACCAAGCGGAAGUUGAUUUAUUUCAGUCGACUCUUCGCUUCUUCAAUUCGUUUUUUG ............................(((((((....))))))).........(((((((((((((((......)))))))).)))))))................. (-16.95 = -17.53 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:02 2006