Locus 1494

Sequence ID 2L_DroMel_CAF1
Location 4,011,257 – 4,011,373
Length 116
Max. P 0.500000
window2425

overview

Window 5

Location 4,011,257 – 4,011,373
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.59
Mean single sequence MFE -21.92
Consensus MFE -14.40
Energy contribution -14.90
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -1.96
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4011257 116 + 22407834
CAGUGCAUUACCCC-UUCCUCUGUACAGCAUGCAUGAAAUGUCUAUUCUAAUCCGGAAAUUAAAUUCCAUUUAGAAAUUGUCC--UAUACAAAAUGUUUGGUCAGACAUGCAGCUCCCU-
..(((((.......-......)))))(((.((((((.........((((((...((((......))))..)))))).(((.((--...((.....))..)).))).)))))))))....- ( -26.22)
>DroPse_CAF1 223725 107 + 1
CCACAUACAAGCCC----------ACAAAAUGCAUGAAAUGUCUAUUCUAAUCCGGAAAUUAAAUUCCAUUUAGAAAUUGUCC--UAUACAAAAUGUUUGGUCAGACGUGGUCCAUCCU-
((((...((.((..----------.......)).))....((((.((((((...((((......))))..))))))...(.((--...((.....))..)).)))))))))........- ( -20.20)
>DroEre_CAF1 150230 116 + 1
GAGUGCAUUACCCC-UUCCUCUACACAGCAUGCAUGAAAUGUCUAUUCUAAUCCGGAAAUUAAAUUCCAUUUAGAAAUUGUCC--UAUACAAAAUGUUUGGUCAGACAUGCACCAUCCU-
(.((((........-..........((.......))..((((((.((((((...((((......))))..))))))...(.((--...((.....))..)).)))))))))))).....- ( -21.10)
>DroYak_CAF1 155401 117 + 1
CAGUGCAUUACCCC-UUCCUCCACACAGCAUGCAUGAAAUGUCUAUUCUAAUCCGGAAAUUAAAUUCCAUUUAGAAAUUGUCC--UAUACAAAAUGUUUGGUCAGACAUGCACCACCCCG
..((((........-..........((.......))..((((((.((((((...((((......))))..))))))...(.((--...((.....))..)).)))))))))))....... ( -20.90)
>DroAna_CAF1 169471 109 + 1
CUGUGCAUUACUCCAUUCCU-----CAGCUUGCACGAAAUGUCUAUUCUAAUCCGGAAAUUAAAUUCCAUUUAGAAAUUGUACCAUAUACAAAAUGUUUGGUCAGACAUGUGCC------
.((((((.............-----.....))))))..((((((.((((((...((((......))))..))))))...(.((((...((.....)).))))))))))).....------ ( -22.87)
>DroPer_CAF1 224180 107 + 1
CCACACACAAGCCC----------ACAAAAUGCAUGAAAUGUCUAUUCUAAUCCGGAAAUUAAAUUCCAUUUAGAAAUUGUCC--UAUACAAAAUGUUUGGUCAGACGUGGUCCAUCCU-
((((...((.((..----------.......)).))....((((.((((((...((((......))))..))))))...(.((--...((.....))..)).)))))))))........- ( -20.20)
>consensus
CAGUGCAUUACCCC_UUCCU____ACAGCAUGCAUGAAAUGUCUAUUCUAAUCCGGAAAUUAAAUUCCAUUUAGAAAUUGUCC__UAUACAAAAUGUUUGGUCAGACAUGCACCAUCCU_
..............................((((((...((.(((((((((...((((......))))..)))))).((((.......))))......))).))..))))))........ (-14.40 = -14.90 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:59 2006