Locus 1492

Sequence ID 2L_DroMel_CAF1
Location 4,006,225 – 4,006,321
Length 96
Max. P 0.795995
window2423

overview

Window 3

Location 4,006,225 – 4,006,321
Length 96
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.77
Mean single sequence MFE -33.62
Consensus MFE -22.11
Energy contribution -23.92
Covariance contribution 1.81
Combinations/Pair 1.13
Mean z-score -1.74
Structure conservation index 0.66
SVM decision value 0.60
SVM RNA-class probability 0.795995
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4006225 96 + 22407834
CGGAGUGGGCGGCCGGUAUCCACCACCACCGC----CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCGCCAC---CACCACGACCCAUUAUCGA
((..(((((((((.((((..(....(((((..----....))))).(((......))).......)..)))).)))))..)---)))..))............ ( -35.50)
>DroVir_CAF1 211750 102 + 1
UGAUGUCGGCUCGCGCUAUCCCUCCU-AUCAACAGGAAGUGGUAGAGGUGAUCACACCAGCGGCUGUCUACCAGCCUCCGCCACCACCACGCCCCAUUGUCGA
.....(((((..(((.......((((-......)))).((((..((((((....))))...(((((.....)))))))..)))).....)))......))))) ( -31.60)
>DroSec_CAF1 139024 96 + 1
CGGAGUGGGCGGUCGCUAUCCACCACCACCGC----CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCGCCAC---CACCACGACCCAUUAUCGA
(((.(((((((((.(((........(((((..----....))))).(((......)))))).)))))))))...)))....---.....(((.......))). ( -33.70)
>DroEre_CAF1 144846 96 + 1
CGGAGUGGGCGGCCGCUAUCCACCACCACCGC----CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCCCCAC---CACCACGACCCAUUAUCGA
.((.(((((((((.(((........(((((..----....))))).(((......)))))).)))))))))...)).....---.....(((.......))). ( -33.60)
>DroWil_CAF1 216473 102 + 1
UGAAGUUGGCGGCCGCUACCCACCGCCCCCAC-CUCCAGUUGUGGAGGUGAUCACUCCAGCCGCUGUCUACCAGCCACCUCCACCGCCGAGACCCAUAAUUGA
.......(((((..........))))).....-(((..((.(((((((((............((((.....))))))))))))).)).)))............ ( -30.50)
>DroYak_CAF1 149934 99 + 1
CGGAGUGGGCGGCCGCUAUCCACCACCGCCGC----CCAUGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCUCCACCACCACCACGACCCAUCAUCGA
.((.(((((((((.(..........).)))))----))))(((((((((......))).((((........)))).)))))).))....(((.......))). ( -36.80)
>consensus
CGGAGUGGGCGGCCGCUAUCCACCACCACCGC____CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCGCCAC___CACCACGACCCAUUAUCGA
.((.(((((((((.(((.((((((................))))))(((......)))))).)))))))))...))........................... (-22.11 = -23.92 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:57 2006