| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 435,879 – 435,973 |
| Length | 94 |
| Max. P | 0.917248 |
| Location | 435,879 – 435,973 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.32 |
| Mean single sequence MFE | -35.60 |
| Consensus MFE | -23.51 |
| Energy contribution | -24.77 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 435879 94 - 22407834 ---------GAAGG---------------CAGAGGGGGCAGAUGGGGGCUGGAGCAAUAAAAUCUCACGGGCUCUGCCGCGAUC-AAAGUCAAUUAAAUGGCGCAAGCGCCAGCAGUGA- ---------...((---------------(((((..(..((((.(..((....))..)...))))..)...)))))))(((((.-...))).......(((((....))))))).....- ( -29.00) >DroSec_CAF1 13230 93 - 1 ---------GGAGG---------------CAGUGGGGGCAGAUGCCGCCUGGAGCAAUA-GAUCUCACGGGCUCUGCCGCGAUC-AAAGUCAAUUAAAUGGCGCAAGCGCCAGCAGUGA- ---------...((---------------(((....(((....)))((((((((.....-...))).))))).)))))(((((.-...))).......(((((....))))))).....- ( -35.80) >DroSim_CAF1 12332 94 - 1 ---------GGAGG---------------CAGUGGGGGCAGAUGCCGCCUGGAGCAAUAAAAUCUCACGGGCUCUGCCGCGAUC-AAAGUCAAUUAAAUGGCGCAAGCGCCAGCAGUGA- ---------...((---------------(((....(((....)))((((((((.........))).))))).)))))(((((.-...))).......(((((....))))))).....- ( -35.00) >DroEre_CAF1 13355 117 - 1 -AAGGCUGAGGGGGCAAGGGGGCAAGUGGCAGAGGGGGCUGAUGGGGCCUGGAGCAAUAAAAUCUCACGGGCUCUGCCGCGAUC-AAAGUCAAUUAAAUGGCGCAAGCGCCAGCAGCGA- -...((((..((.((...(.(.((.(((((((((.(((((.....))))).(((.........))).....)))))))))(((.-...))).......)).).)..)).))..))))..- ( -44.10) >DroYak_CAF1 12894 102 - 1 -AAGGCUGUGGGGG---------------CAGAGGGGACAGUUGGGGCCUGGAGCUAUAAAAUCUCACGGGCUCUGCCGCGAUC-AAAGUCAAUUAAAUGGCGCAAGCGCCAGCAGCGA- -...(((((.(.((---------------(((((....).......((((((((.........))).))))))))))).)....-.............(((((....))))))))))..- ( -40.00) >DroAna_CAF1 16682 101 - 1 AAUUAUUGUUAAGA---------------AAAAAGGGGCUGCGG----UGGGGGCUAUAAAAUCCCACGGGCUCUGCCGCGACUAAAACUCAAUUAAAUGGCGCAAGCGCCAGCAGCGAA ..............---------------........(((((((----..(((.((............)).)))..))....................(((((....))))))))))... ( -29.70) >consensus _________GGAGG_______________CAGAGGGGGCAGAUGGGGCCUGGAGCAAUAAAAUCUCACGGGCUCUGCCGCGAUC_AAAGUCAAUUAAAUGGCGCAAGCGCCAGCAGCGA_ ....................................((((((....((((((((.........))).)))))))))))(((((.....))).......(((((....)))))))...... (-23.51 = -24.77 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:28 2006