| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,998,933 – 3,999,027 |
| Length | 94 |
| Max. P | 0.939020 |
| Location | 3,998,933 – 3,999,027 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.80 |
| Mean single sequence MFE | -34.20 |
| Consensus MFE | -22.41 |
| Energy contribution | -22.52 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3998933 94 - 22407834 ----------------------CAUUGCAUGCCGCUUGCAAUUUGGCGGCGCUGAUAUGCAAAUUAAGUUGUUGCACUAAACGACGUGCCGGGAAACAG--GGA-AACCAUGG-GCGGCG ----------------------..((((((((((((........))))))......)))))).....((((((......))))))..(((((....).(--(..-..))....-.)))). ( -35.20) >DroVir_CAF1 203170 80 - 1 ----------------------CGUUGCAUGCCGCCUGCAAUUUGGCGGCGCUGAUAUGCAAAUUAAGUUGUUGCGCUAAACGACGUGCCGGGAAACAG--GUU---------------- ----------------------..((((((((((((........))))))......)))))).....((((((......))))))..(((.(....).)--)).---------------- ( -28.30) >DroPse_CAF1 209209 114 - 1 -CCCGCCCCCCGUCU---CAAUCAUUGCAUGCCGCCUGCACUUUGGCGGCGCUGAUAUGCAAAUUAAGUUGUUGCACUAAACGACGUGCCGGGAAAUGGAUGAA-AACUAUGA-AGGGGA -(((....((((.(.---(.....((((((((((((........))))))......)))))).....((((((......))))))).).))))..((((.(...-.)))))..-.))).. ( -36.70) >DroWil_CAF1 201184 86 - 1 -------------UC---CAAUCAUUGCAUGCCGCGUGCAAUUUGGUGGCGCUGAUAUGCAAAUUAAGUUGUUGCACUAAACGACGUGCCCGGUAACAC--GGG---------------- -------------..---......((((((((.((((.((......)))))).).))))))).....((((((......))))))...((((......)--)))---------------- ( -24.60) >DroAna_CAF1 153291 118 - 1 ACACAGCCAUCCUCUCGGCAAUCAUUGCAUGCCGCGUGCAAUUUGGCGGCGCUGAUAUGCAAAUUAAGUUGUUGCACUAAACGACGUGCCGGGAAACAG--GGAAAACCAUGGGGCGGCG .....(((..((((((((((....((((((((.((((((......)).)))).).))))))).....((((((......)))))).))))))))..(((--(.....)).))))..))). ( -45.60) >DroPer_CAF1 209605 114 - 1 -CCCGCCCACCGUCU---CAAUCAUUGCAUGCCGCCUGCAAUUUGGCGGCGCUGAUAUGCAAAUUAAGUUGUUGCACUAAACGACGUGCCGGGAAAUGGAUGAA-AACUAUGA-AGGGGA -....(((..(((((---...((...((((((((((........))))))((......)).......((((((......))))))))))...))...)))))..-..((....-))))). ( -34.80) >consensus _____________CU___CAAUCAUUGCAUGCCGCCUGCAAUUUGGCGGCGCUGAUAUGCAAAUUAAGUUGUUGCACUAAACGACGUGCCGGGAAACAG__GGA_AAC_AUG____GG__ ..........................((((((((((........))))))((......)).......((((((......))))))))))............................... (-22.41 = -22.52 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:53 2006