Locus 1488

Sequence ID 2L_DroMel_CAF1
Location 3,992,566 – 3,992,656
Length 90
Max. P 0.821412
window2418

overview

Window 8

Location 3,992,566 – 3,992,656
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -19.30
Consensus MFE -15.26
Energy contribution -15.26
Covariance contribution -0.00
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.79
SVM decision value 0.68
SVM RNA-class probability 0.821412
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3992566 90 + 22407834
CCGUGCGGUUUUCUCUCACAUUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU
....((((.......((((((....(((((((((.......))))))))).))).))).....((((((....)))))).))))...... ( -18.90)
>DroSec_CAF1 125571 90 + 1
CCGUGCGCCUUACUCUCACACUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU
..((((((.......(((.((....(((((((((.......)))))))))...)))))....((((....)))))))))).......... ( -20.00)
>DroSim_CAF1 130152 90 + 1
CCGUGCGCUUUGCUCUCACACUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU
..((((((((.((..............(((((((.......)))))))((((........))))......)))))))))).......... ( -20.40)
>DroEre_CAF1 130893 90 + 1
CCGGAGGCUUUUCUCUCACAUUCCCUUGCUGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUCAU
..((((((.......((((((....((((..(((.......)))..)))).))).))).....((((((....))))))...)))))).. ( -19.80)
>DroYak_CAF1 134331 90 + 1
CCGGAGGCUUUUCUCUCACAUUCUCUUGCUGAAGCUGGCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU
.((((.((.......(((((......)).))).(((.((.......((((((........))))))....)).))))).))))....... ( -17.40)
>consensus
CCGUGCGCUUUUCUCUCACAUUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU
...............((((((....(((((((((.......))))))))).))).))).....((((((....))))))........... (-15.26 = -15.26 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:52 2006