Locus 1485

Sequence ID 2L_DroMel_CAF1
Location 3,980,416 – 3,980,507
Length 91
Max. P 0.926651
window2413

overview

Window 3

Location 3,980,416 – 3,980,507
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 94.51
Mean single sequence MFE -27.26
Consensus MFE -25.60
Energy contribution -24.96
Covariance contribution -0.64
Combinations/Pair 1.21
Mean z-score -1.36
Structure conservation index 0.94
SVM decision value 1.18
SVM RNA-class probability 0.926651
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3980416 91 - 22407834
GCAACGACUGGGUAUGGGGAAAACUCGGAGAAAACCCUGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUCGCUGAGCCACGACAC
....(((((((((.((((.....(((((........)))))....)))).)))))))))..............((((........)))).. ( -31.70)
>DroSec_CAF1 113507 91 - 1
GCAAAGAUUGGGUAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCUCAGUUCCACUUUUGUUUCGAGUCGCUGAGCCACGACAC
........(((((.((((.....))))......)))))(((....))).((((((((...((((.......)))).))))))))....... ( -27.70)
>DroSim_CAF1 118025 91 - 1
GCAAAGAUUGGGUAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUCGCUGAGCCACGACAC
(((...(((((((.((((.....(..((.......))..).....)))).)))))))))).............((((........)))).. ( -27.30)
>DroEre_CAF1 118714 91 - 1
AAAAAGAUUGGGAAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGCGUCGCUGAGCCACGACAC
.....(((((((..((((.....(..((.......))..).....))))..)))))))...............((((........)))).. ( -25.90)
>DroYak_CAF1 122052 91 - 1
AAAAAAAUUGGGAAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUUGCUGAGCCACGACAC
.....(((((((..((((.....(..((.......))..).....))))..)))))))((((((.......))).)))............. ( -23.70)
>consensus
GCAAAGAUUGGGUAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUCGCUGAGCCACGACAC
.....(((((((..((((.....((.((.......)).)).....))))..)))))))...............((((........)))).. (-25.60 = -24.96 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:47 2006