Locus 1483

Sequence ID 2L_DroMel_CAF1
Location 3,973,117 – 3,973,208
Length 91
Max. P 0.999884
window2410 window2411

overview

Window 0

Location 3,973,117 – 3,973,208
Length 91
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 97.84
Mean single sequence MFE -25.88
Consensus MFE -24.90
Energy contribution -25.10
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.86
Structure conservation index 0.96
SVM decision value 4.37
SVM RNA-class probability 0.999884
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3973117 91 + 22407834
UUUGCUUGUUUAUCUGUGCGAGUUUUGU--GUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA
...((((((........))))))...((--((((((...(((((((...........((((...)))))))))))...))))))))....... ( -26.40)
>DroSim_CAF1 108958 91 + 1
UUUGCUUGUUUAUCUGUGCGAGUUUUGU--GUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA
...((((((........))))))...((--((((((...(((((((...........((((...)))))))))))...))))))))....... ( -26.40)
>DroEre_CAF1 111381 90 + 1
UUUGCUUGUUUAUCUGUGCGAGUUUUGU---UGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA
...(((....((((((((((((((....---.)))))))(((((.((..........)).)))))..)))))))....)))............ ( -25.70)
>DroYak_CAF1 114654 93 + 1
UUUGCUUGUUUAUCUGUGCGAGUUUUGUGUGUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA
...((((((........))))))...((((((((((...(((((((...........((((...)))))))))))...))))))))))..... ( -29.00)
>DroAna_CAF1 126904 93 + 1
UUUGCUUGUUUAUCUGUGCGAGUUUUGUGUGUGCCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA
...((((((........))))))...(((((((.((...(((((((...........((((...)))))))))))...)).)))))))..... ( -21.90)
>consensus
UUUGCUUGUUUAUCUGUGCGAGUUUUGU__GUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA
...(((....((((((((((((((........)))))))(((((.((..........)).)))))..)))))))....)))............ (-24.90 = -25.10 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 3,973,117 – 3,973,208
Length 91
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 97.84
Mean single sequence MFE -20.11
Consensus MFE -19.76
Energy contribution -19.76
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.98
SVM decision value 3.47
SVM RNA-class probability 0.999264
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3973117 91 - 22407834
UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCAC--ACAAAACUCGCACAGAUAAACAAGCAAA
............(((....(((((((.((((((.((..........)).))))))((((....--......)))).)))))))....)))... ( -19.70)
>DroSim_CAF1 108958 91 - 1
UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCAC--ACAAAACUCGCACAGAUAAACAAGCAAA
............(((....(((((((.((((((.((..........)).))))))((((....--......)))).)))))))....)))... ( -19.70)
>DroEre_CAF1 111381 90 - 1
UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCA---ACAAAACUCGCACAGAUAAACAAGCAAA
(((((((.((((((....))...((((((..................)))))))))).))))---)))......((............))... ( -20.87)
>DroYak_CAF1 114654 93 - 1
UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCACACACAAAACUCGCACAGAUAAACAAGCAAA
............(((....(((((((.((((((.((..........)).))))))((((............)))).)))))))....)))... ( -19.50)
>DroAna_CAF1 126904 93 - 1
UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGGCACACACAAAACUCGCACAGAUAAACAAGCAAA
............(((....(((((((.((((((.((..........)).))))))((((............)))).)))))))....)))... ( -20.80)
>consensus
UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCAC__ACAAAACUCGCACAGAUAAACAAGCAAA
............(((....(((((((.((((((.((..........)).))))))((((............)))).)))))))....)))... (-19.76 = -19.76 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:45 2006