Locus 1482

Sequence ID 2L_DroMel_CAF1
Location 3,970,222 – 3,970,331
Length 109
Max. P 0.737076
window2409

overview

Window 9

Location 3,970,222 – 3,970,331
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 91.91
Mean single sequence MFE -36.20
Consensus MFE -27.46
Energy contribution -28.86
Covariance contribution 1.40
Combinations/Pair 1.06
Mean z-score -1.88
Structure conservation index 0.76
SVM decision value 0.44
SVM RNA-class probability 0.737076
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3970222 109 - 22407834
GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGCUAGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGCUUGUGCAUGUAUAUGGAGUAUCUGUGUGCAGUUA
((((((.(((.((.((((((((((.((..(((((...))))).)).)))))))))).))......))).)))))).......(((((((((.....))))))))).... ( -37.40)
>DroSec_CAF1 103452 109 - 1
GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUCGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGCGAGCGCAUGUAUAUGGAGUAUCUGUGUGAAGUUA
...((((....((.(((((((.((.....(((.(((((((((((((((..((....))..)))....))))..))))))))))).....)).))))))).))..)))). ( -35.80)
>DroSim_CAF1 105965 109 - 1
GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUCGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGCGUGCGCAUGUAUAUGGAGUAUCUGUGUGCAGUUA
(((.((..((.(((((((((((((.((..(((.......))).)).)))))))))((((((((((.......)))).)))))).......)))).)).)).)))..... ( -39.40)
>DroEre_CAF1 108384 107 - 1
GCCAACUCGAAACUCAGCUGCACCUGCUUCAUUGUGCUCGUGCGCUGGAGUAUCUGUGUGCCCCAUUGUGACUGU--GUGCAUGUGUAUGAAGUAUCUGUGUGCAGUUA
...............(((((((((((((((((...((.(((((((.(.(((....(((.....)))....))).)--))))))).))))))))))...).)))))))). ( -33.50)
>DroYak_CAF1 111625 107 - 1
GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUGGUGCGCUGGAGUAUCUGUGUGCCUCAUUGUGAUUGU--GUGUAUGUAUAUGGAGUAUCUGUGUGCAGUUA
(((.((..((.((((.((((((((.((........)).)))))))).)))).)).)).))).......(((((((--(..((.((((.....)))).))..)))))))) ( -34.90)
>consensus
GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUCGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGC__GUGCAUGUAUAUGGAGUAUCUGUGUGCAGUUA
((((((.(((.((.((((((((((.((..(((.......))).)).)))))))))).))......))).)))))).......(((((((((.....))))))))).... (-27.46 = -28.86 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:44 2006