Locus 1481

Sequence ID 2L_DroMel_CAF1
Location 3,966,624 – 3,966,716
Length 92
Max. P 0.551169
window2408

overview

Window 8

Location 3,966,624 – 3,966,716
Length 92
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 83.09
Mean single sequence MFE -21.39
Consensus MFE -13.92
Energy contribution -13.92
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.65
SVM decision value 0.03
SVM RNA-class probability 0.551169
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3966624 92 + 22407834
AGGGCCAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUACGCCAGCCACC-----------CC--
..(((.....((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))........))).......-----------..-- ( -20.32)
>DroPse_CAF1 155797 99 + 1
AGGG----A-AAAAAACGUGGAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGCUCUGAUUUUUGGUAA-CCUCCCAAAGACCACUCC-U
.(((----(-.......(((((((((((((((...((..((((.....)))))).))))))))))).........(((((((...-....))))))))))))))-) ( -25.61)
>DroEre_CAF1 104657 92 + 1
AGGGCCAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCAACCACC-----------CC--
..(((.((((((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))...)))).))).......-----------..-- ( -21.60)
>DroWil_CAF1 154369 82 + 1
-----------GAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUGGCCUCGCACA-----------C-AC
-----------..((((((-((((((((((((...((..((((.....)))))).)))))))))).......))))))))...........-----------.-.. ( -16.61)
>DroYak_CAF1 107889 92 + 1
AGGGCCAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCAACCACC-----------CC--
..(((.((((((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))...)))).))).......-----------..-- ( -21.60)
>DroAna_CAF1 120605 93 + 1
CGGGCAAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCU-CCACC-----------UCCC
.(((((((((((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))..))))).))))-.....-----------.... ( -22.60)
>consensus
AGGGCCAAAAAGAAAAAGU_CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCA_CCACC___________CC__
.....................(((((((((((...((..((((.....)))))).)))))))))))........................................ (-13.92 = -13.92 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:43 2006