Locus 1480

Sequence ID 2L_DroMel_CAF1
Location 3,964,025 – 3,964,120
Length 95
Max. P 0.985174
window2407

overview

Window 7

Location 3,964,025 – 3,964,120
Length 95
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 94.63
Mean single sequence MFE -24.47
Consensus MFE -19.90
Energy contribution -19.35
Covariance contribution -0.55
Combinations/Pair 1.16
Mean z-score -3.54
Structure conservation index 0.81
SVM decision value 2.00
SVM RNA-class probability 0.985174
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3964025 95 + 22407834
AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGG-GCCAUUCGUUCAAUAUUGAAUGUGCU--CGCAAUAAAUGUAAUGACUG
...((((..(((((((((....))))))))).............(((((-((((((((........)))))).)))--)))).....))))....... ( -26.50)
>DroVir_CAF1 158395 95 + 1
AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCGAAUAGAAAAUCCUUGUGG-GCCAUUCAUGCAAUAUUGAAUGUGUU--CGCAAUAAAUGUAAUGACUG
...((((..(((((((((....)))))))))............((((((-((((((((........)))))).)))--)))))....))))....... ( -22.60)
>DroPse_CAF1 151163 98 + 1
AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGGGGCCAUUCAUUCAAUAUUGAAUGUGCUCUCGCAAUAAAUGUAAUGACUG
...((((..(((((((((....))))))))).............((((((((((((((........)))))).)).)))))).....))))....... ( -26.70)
>DroGri_CAF1 145493 95 + 1
AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCUUGUGG-GCCAUUCAUUCAAUAUUAAAUGUGUU--CGCAAUAAAUGUAAUGACUA
...((((..(((((((((....)))))))))............((((((-((((((.(........).)))).)))--)))))....))))....... ( -17.10)
>DroAna_CAF1 117568 95 + 1
AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGG-GCCAUUCAUUCAAUAUUGAAUGUGCU--CGCAAUAAAUGUAAUGAUUG
...((((..(((((((((....))))))))).............(((((-((((((((........)))))).)))--)))).....))))....... ( -27.20)
>DroPer_CAF1 149099 98 + 1
AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGGGGCCAUUCAUUCAAUAUUGAAUGUGCUCUCGCAAUAAAUGUAAUGACUG
...((((..(((((((((....))))))))).............((((((((((((((........)))))).)).)))))).....))))....... ( -26.70)
>consensus
AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGG_GCCAUUCAUUCAAUAUUGAAUGUGCU__CGCAAUAAAUGUAAUGACUG
...((((..(((((((((....))))))))).............((((..((((((((........)))))).))...)))).....))))....... (-19.90 = -19.35 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:42 2006