Locus 148

Sequence ID 2L_DroMel_CAF1
Location 435,400 – 435,496
Length 96
Max. P 0.934957
window232

overview

Window 2

Location 435,400 – 435,496
Length 96
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 76.98
Mean single sequence MFE -33.80
Consensus MFE -24.18
Energy contribution -24.76
Covariance contribution 0.58
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.72
SVM decision value 1.24
SVM RNA-class probability 0.934957
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 435400 96 + 22407834
CCACGAUACGUAGUUCGUAGUUGGACCUCU---------------------GUGAGGUCUGGGGUCUCGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU
((((((((((.....)))).(..((((((.---------------------..))))))..).(((..(((((.((.((((((...)))))).))))))).)))..))).))).... ( -31.50)
>DroSec_CAF1 12748 93 + 1
CCACGAUACGUAGUUCU---UUGGACCUCU---------------------CUGAGGUCUGGGGUCUGGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU
(((((((.((.....((---(..((((((.---------------------..))))))..))).(..(((((.((.((((((...)))))).)))))))..))))))).))).... ( -35.60)
>DroSim_CAF1 11849 93 + 1
CCACGAUACGUAGUUCU---UUGGACCUCU---------------------CUGAGGUCUGGGGUCUGGGGUCUGAUCGAUAGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU
(((((((.((.....((---(..((((((.---------------------..))))))..))).(..(((((((((((((...))))))))...)))))..))))))).))).... ( -33.90)
>DroEre_CAF1 12810 112 + 1
-CGCGAUC-GUAGUUCU---UUGGACCUCGCUGGGGUCUGGGUUCUGGGGUCUGGGGUCUGGGGUCUGGGGUCUGAUCGAUCGAAGCGAUCGUUCGACUUUGGCGAUUGUUGGAACG
-.......-...(((((---...(((.((((..(((((.(((..(..((.((..(...)..)).))..)..)))((.((((((...)))))).)))))))..))))..)))))))). ( -42.90)
>DroYak_CAF1 12389 73 + 1
-CACGAUCCACAGUUC-------------------------------------------UGUGGUCUGGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGCUGGAACU
-(((((((((((....-------------------------------------------))))(.(..(((((.((.((((((...)))))).)))))))..))))))).))..... ( -25.10)
>consensus
CCACGAUACGUAGUUCU___UUGGACCUCU_____________________CUGAGGUCUGGGGUCUGGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU
............((((....(..((((((........................))))))..).(.((..((((.((.((((((...)))))).))))))..)))........)))). (-24.18 = -24.76 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:27 2006