| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,943,718 – 3,943,813 |
| Length | 95 |
| Max. P | 0.559634 |
| Location | 3,943,718 – 3,943,813 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.56 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -2.66 |
| Energy contribution | -3.66 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.14 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3943718 95 + 22407834 AUGGCUUAAAAUGUUUUUGGUAUUGCGGUAUUGAUUUAAAAAGCU--AAUAGGCUUUUGCCCCUUGCAAUCAAUAGUUUUAUUAUAUUUUUGAG------------------CUA .((((((((((......(((((..((..((((((((..(((((((--....)))))))((.....))))))))))))..)))))...)))))))------------------))) ( -23.20) >DroSec_CAF1 76915 95 + 1 AUGGCUUAAAAUGUUUUUGGUAUUGUGGUAUUGAUUUAAAAAGCU--UAUAGGCUUUUGCCCCUUGCACUCAAUAGUUAUAUUAUAUUUUCGAG------------------CUA .(((((((((((((..(.(.(((((.((((........(((((((--....)))))))......))).).))))).)...)..))))))).)))------------------))) ( -20.54) >DroSim_CAF1 75810 95 + 1 AUGGCUUAAAAUGUUUUUGGUAUUGUGGUAUUGAUUUAAAAAGCU--UAUAGGCUUUUGCCCCUUGCACUCAAUAGUUGUAUUAUAUUUUCGAG------------------CUA .(((((((((((((..(.(.(((((.((((........(((((((--....)))))))......))).).))))).)...)..))))))).)))------------------))) ( -20.54) >DroEre_CAF1 81314 89 + 1 UUGGCUUAAAAUAUUUUU------GUGGUAUUGA---AAAGAGGUGGUAUUG-GUUUUGCCUUUUGUAUUCAAUAGUUUUAUUAUAUUG-----------C-----AAUGUUCUA ...((....(((((....------..(.((((((---(((((((..(.....-...)..))))))...))))))).)......))))))-----------)-----......... ( -15.20) >DroYak_CAF1 83789 106 + 1 AUGGCUUAAAAUAUUUUU------GUGGUAUUAAUUUAAAAAGCU--UAUUG-UGUUGCCCUCUUGCAUUCAAUAGUUUUAUUUUAUUCUCGUGCUGGCACAACCCCUUGUCCCA ..(((....((((((...------..)))))).......((((((--.((((-...(((......)))..)))))))))).............)))((.((((....)))).)). ( -15.50) >consensus AUGGCUUAAAAUGUUUUUGGUAUUGUGGUAUUGAUUUAAAAAGCU__UAUAGGCUUUUGCCCCUUGCACUCAAUAGUUUUAUUAUAUUUUCGAG__________________CUA ............................((((((....(((((((......)))))))((.....))..))))))........................................ ( -2.66 = -3.66 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:39 2006