| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,913,297 – 3,913,414 |
| Length | 117 |
| Max. P | 0.617598 |
| Location | 3,913,297 – 3,913,414 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.19 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -22.92 |
| Energy contribution | -22.95 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3913297 117 - 22407834 ---CUCCAUCCACUCCACAACCGGCCGAAAAGCCCGAAGAAAAGAGUCCAGAACAUUUGGCAUACUUAGAUGCGAUCAAGCAACUGAAUAGCUAUCAGGUUUUGGAACCCACUUCCGGCA ---............................(((.((((.......((((((((...((((.((.((((.(((......))).)))).))))))....)))))))).....)))).))). ( -31.50) >DroSec_CAF1 46679 117 - 1 ---AUCCAUCUACUCCACAACCGGCAGAAAAACCCGAAGAAAAGAGUCCGGAACAUUUGGCAUACUUAGAUGCGAUUAGGCAAUUGAAUAGCUAUCAGGUUUUGGAACCCACUUCCGGCA ---.........((((......)).)).....((.((((.......((((((((...((((.((.((((.(((......))).)))).))))))....)))))))).....)))).)).. ( -25.30) >DroSim_CAF1 45167 117 - 1 ---CUUCAUCUACUCCACAACAGGCAGAAAAGCCCGAAGAAAAGAGUCCGGAACAUUUGGCAUACUUAGAUGCGAUUAGGCAAUUGAAUAGCUAUCAGGUUUUGGAGCCCACUUCUGGCA ---.........((((......)).))....(((.((((....(..((((((((...((((.((.((((.(((......))).)))).))))))....))))))))..)..)))).))). ( -28.90) >DroEre_CAF1 45615 117 - 1 ---CUCCAACUACUCCAGAACCGGCCGAAAGACCCGAGGAAAAGAGUCCGGAACACUUGGCAUACCUAGAUGCCAUCAGGCAACUGAAUAGCUAUCAGGUUUUGGAGCCGACUACCGGAA ---.........((((((((((((.(....).)).(((((......)))........((((((......))))))((((....)))).......)).))))))))))(((.....))).. ( -39.40) >DroYak_CAF1 47833 120 - 1 CAGCUACAUCUACUCCGCAACCGGUCGAAAAACCCGAAGAAAAGAGUCCAGAACAUUUGGCCUAUCUAGAUGCCAUCAAGCAACUGAAUAGCUACCAGGUUUUGGAACCGACUUCCGGGA ..............(((....)))........(((((((....(..((((((((...(((.((((.(((.(((......))).))).))))...))).))))))))..)..))).)))). ( -30.30) >DroAna_CAF1 64931 111 - 1 ---UGAGUACUGUGCCAGAACCGG------AACCGGAAGAGAAGAGUCCCGAGCACCUGGCCUAUUUGGAUGCCAUCAAGCAGUUGAAUAGCUAUCAGGUCCUGGAACCGGCUGCAGGAC ---......(((((((....(((.------...))).......(.((.((.((.((((((.(((((..(.(((......))).)..)))))...)))))).)))).)))))).))))... ( -35.40) >consensus ___CUCCAUCUACUCCACAACCGGCCGAAAAACCCGAAGAAAAGAGUCCGGAACAUUUGGCAUACUUAGAUGCCAUCAAGCAACUGAAUAGCUAUCAGGUUUUGGAACCCACUUCCGGCA ................................((.((((....(..((((((((...((((.((.((((.(((......))).)))).))))))....))))))))..)..)))).)).. (-22.92 = -22.95 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:31 2006