Locus 1472

Sequence ID 2L_DroMel_CAF1
Location 3,911,245 – 3,911,338
Length 93
Max. P 0.740878
window2395

overview

Window 5

Location 3,911,245 – 3,911,338
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.01
Mean single sequence MFE -36.17
Consensus MFE -19.38
Energy contribution -19.77
Covariance contribution 0.39
Combinations/Pair 1.22
Mean z-score -1.95
Structure conservation index 0.54
SVM decision value 0.45
SVM RNA-class probability 0.740878
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3911245 93 - 22407834
AGGGUCAAGCAGCAAUUCG---------AACGAGAAUAACUACAGUAAUGCCAGGGAUCUGUCGCAGGAGGCAUUGUGGCGCCUCCAAAUGGCCACCGCCCA
.((((...(.((..((((.---------.....))))..)).)......((((.(((..((((((((......))))))))..)))...))))....)))). ( -27.90)
>DroPse_CAF1 74574 93 - 1
AGGGUCGAGCAACAAUUCG---------AAUGAGAACAACUACAGCAAUGCCAGGGAUCUGUCGCAGGAGGCCCUGUGGCGGCUCCAAUUGGUUGCGGCCCA
.(((((.........(((.---------.....)))........(((..((((.(((.((((((((((....)))))))))).)))...)))))))))))). ( -38.90)
>DroGri_CAF1 69842 90 - 1
AGGGUCGAAC------------GGCAGCCAGGAGAAUAACUAUAGCAAUGCACGCGAUCUGUCGCAGGAGGCGCUGUGGCGCCUGCAACUAGCCGCCGCCCA
.(((.((..(------------(((.((.((........))...))..(((..((((....))))...((((((....)))))))))....)))).))))). ( -35.20)
>DroMoj_CAF1 78065 102 - 1
AGGGUCGAACAACAUGCCCGGAGGCAGCCAGGAGAACAACUAUAGCAAUGCGCGCGAUUUGUCGCAGGAGGCGCUGUGGCGCCUCCAGCUGGCCGCCGCUCA
.((((..........))))((.(((.(((((.............((.....))((((....)))).((((((((....))))))))..))))).))).)).. ( -45.10)
>DroAna_CAF1 62796 93 - 1
AGGGUCGAGCAACAAUUCC---------AAUGAGAACAACUACAGCAACGCCAGGGACAUGUCGCAGGAGGCCUUGUGGCGCCUCCAAUUGGCCGCCGGCCA
..(((((.((.....(((.---------.....))).............((((.(((..(((((((((....)))))))))..)))...)))).))))))). ( -32.00)
>DroPer_CAF1 74867 93 - 1
AGGGUCGAGCAACAAUUCG---------AAUGAGAACAACUACAGUAAUGCCAGGGAUCUGUCGCAGGAGGCCCUGUGGCGGCUCCAAUUGGUUGCGGCCCA
.((((((........(((.---------.....)))((((((((....))....(((.((((((((((....)))))))))).)))...)))))))))))). ( -37.90)
>consensus
AGGGUCGAGCAACAAUUCG_________AAUGAGAACAACUACAGCAAUGCCAGGGAUCUGUCGCAGGAGGCCCUGUGGCGCCUCCAAUUGGCCGCCGCCCA
.((((...........................((.....))...((...((((.(((..((((((((......))))))))..)))...)))).)).)))). (-19.38 = -19.77 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:30 2006