Locus 1471

Sequence ID	2L_DroMel_CAF1
Location	3,910,750 – 3,910,842
Length	92
Max. P	0.617614

overview

Window 4

Location	3,910,750 – 3,910,842
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	91.45
Mean single sequence MFE	-22.52
Consensus MFE	-16.30
Energy contribution	-16.22
Covariance contribution	-0.08
Combinations/Pair	1.14
Mean z-score	-2.01
Structure conservation index	0.72
SVM decision value	0.17
SVM RNA-class probability	0.617614
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3910750 92 - 22407834
GCAAGAUGGGGUUUCCA-AAAUCUCGUGCCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU
.....((((((((....-.)))))))).(((((....(((((((((..((....))(((((...))))).)))))..))))..)))))..... ( -21.00)
>DroSec_CAF1 44124 92 - 1
GCGAGAUGGGGUUUCCG-AAAUCUCGUACCCAAAACUAGAUUAUUUCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU
(((((((.((....)).-..))))))).(((((....(((((......((....))(((((...))))).......)))))..)))))..... ( -24.40)
>DroSim_CAF1 42613 92 - 1
GCGAGAUGGGGUUCCCA-AAAUCUCGUACCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU
(((((((.((....)).-..))))))).(((((....(((((((((..((....))(((((...))))).)))))..))))..)))))..... ( -28.30)
>DroEre_CAF1 43061 92 - 1
UAGAGGUGGGAUUCCCA-AAAUCUGGUAUCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU
...........((((((-(..((((((.......))))))((((((..((....))(((((...))))).)))))).......)))))))... ( -23.00)
>DroYak_CAF1 45242 93 - 1
GCUAGGUAGAAUUUCCAAAAAUCUCGUAUCUAAAACAAGAUUAUUGCCGCACAAGCUGCUCGUCGAGCAACAAUAAAAUCUCAUUGGGAAAAU
...........(((((((...(((.((.......)).)))((((((..((....))(((((...))))).)))))).......)))))))... ( -15.90)
>consensus
GCGAGAUGGGGUUUCCA_AAAUCUCGUACCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU
.....((((((((......)))))))).(((((....(((((((((..((....))(((((...))))).)))))..))))..)))))..... (-16.30 = -16.22 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:29 2006