Locus 1467

Sequence ID 2L_DroMel_CAF1
Location 3,886,549 – 3,886,661
Length 112
Max. P 0.507194
window2388

overview

Window 8

Location 3,886,549 – 3,886,661
Length 112
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 86.96
Mean single sequence MFE -23.75
Consensus MFE -15.19
Energy contribution -15.63
Covariance contribution 0.44
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.64
SVM decision value -0.05
SVM RNA-class probability 0.507194
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3886549 112 - 22407834
UUGAUAGAAUAUGCAAAGUGUUUAAAACCAUUUAAAGAUUUCGGAUAAUGCCCAUUGUUUUGUGAAAUCUGAUA-AAACAAUAGUGCAUCGAGUUGGCAUAAAGCACUUAUGC
............(((((((((((....(((.........((((....(((((.((((((((((.(....).)))-))))))).).)))))))).)))....)))))))).))) ( -23.80)
>DroSec_CAF1 18628 112 - 1
UUCAUAAAAUAUGCAAAGUGUUUAAAUCCAUUUAAAGAUUUCGGAUAAUGCCCAUUGUUUUGUAAAAUCUGAUA-AAACAAUAGUGCAAGGAAUUGGCAUAAAGCACUUACGC
...............((((((((..((((.............)))).(((((.((((((((((........)))-)))))))(((.......)))))))).)))))))).... ( -21.12)
>DroSim_CAF1 18747 112 - 1
UUGAUAGAAUAUGCAAAGUGUUUAAAGCCAUUUAAAGAUUGCGGAUAAUGCCCAUUGUUUUGUAAAAUCUGAUA-AAACAAUAGUGCAACGAGUUGGCAUAAAGCACUUACGC
...............((((((((...((((.((...(.((((((.......))((((((((((........)))-)))))))...))))).)).))))...)))))))).... ( -25.30)
>DroEre_CAF1 18089 109 - 1
UUGAUAAAAUAUACAAAGUGUUUAACGCAAUUGCAAGAUUUUGGAUAAUUUGCAUUGUUUUGUAAAAUCUGAUUGCAACAUUCAUGC----AGUUGGCAUAAAGCACUUACAC
...............((((((((.......(((((((((..((.(.....).))..)))))))))...(..((((((.......)))----)))..)....)))))))).... ( -24.80)
>consensus
UUGAUAAAAUAUGCAAAGUGUUUAAAGCCAUUUAAAGAUUUCGGAUAAUGCCCAUUGUUUUGUAAAAUCUGAUA_AAACAAUAGUGCAACGAGUUGGCAUAAAGCACUUACGC
...............((((((((............((((((((((((((....)))))))...))))))).............((((.........)))).)))))))).... (-15.19 = -15.63 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:24 2006