Locus 1465

Sequence ID 2L_DroMel_CAF1
Location 3,875,352 – 3,875,445
Length 93
Max. P 0.618016
window2386

overview

Window 6

Location 3,875,352 – 3,875,445
Length 93
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 76.87
Mean single sequence MFE -17.48
Consensus MFE -9.50
Energy contribution -11.42
Covariance contribution 1.92
Combinations/Pair 1.17
Mean z-score -1.78
Structure conservation index 0.54
SVM decision value 0.17
SVM RNA-class probability 0.618016
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3875352 93 + 22407834
GACCCUUUUGAUUUAGAUAAUAUCAAUUUUAUAUUUUACUUC----------------------CAAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC
..(((((((((((...((((........))))..........----------------------....................((((........))))..))))))))))).. ( -13.20)
>DroSec_CAF1 7732 103 + 1
GACUCUUUUGAUUUAGACAAUAUCAAUUUGAUAUUGUACUUCAACAG-------U--AC---ACCUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC
..(((((((((((((((.((((((.....))))))(((((.....))-------)--))---..............................)))))......)))))))))).. ( -19.60)
>DroSim_CAF1 7822 103 + 1
GACCCUUUUGAUUUGGACAAUAUCAAUUUGAUAUUGUACUUCAACAG-------U--CC---ACCUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC
..(((((((((((.((((((((((.....))))))))..........-------.--..---......................((((........))))))))))))))))).. ( -24.70)
>DroEre_CAF1 7160 107 + 1
C--UUUUUUCAUUC----UAUAUU-AUUUGAUAUUGUACUUCAGUAUC-AGCAUUUAACCGUCCGUAUUCCCCACAUAUACAGCCAAUAAUUUCUAAUUGCCAGUCGAGUGGGAC
.--...........----......-..(((((((((.....)))))))-))...................(((((....((.(.((((........)))).).))...))))).. ( -16.30)
>DroYak_CAF1 9458 115 + 1
CAACCUUUUUAUUUUGACAAUAUCAAUUUGAUUGUGUACUUUAAUAUGAAGCAUUUUACACUAUGUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGCGGGAU
...(((.......((((.....))))((((((((.(((((((.....))))...........((((((.........))))))...............))))))))))).))).. ( -13.60)
>consensus
GACCCUUUUGAUUUAGACAAUAUCAAUUUGAUAUUGUACUUCAACAG_______U__AC___ACCUAUUCCCCACAUAUACAUCCAAUAAUUUCUAAUUGCCAGUCAAGGGGGAC
..(((((((((((...((((((((.....))))))))...............................................((((........))))..))))))))))).. ( -9.50 = -11.42 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:22 2006