| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,874,922 – 3,875,042 |
| Length | 120 |
| Max. P | 0.561195 |
| Location | 3,874,922 – 3,875,042 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Mean single sequence MFE | -48.15 |
| Consensus MFE | -29.05 |
| Energy contribution | -29.77 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3874922 120 - 22407834 CACGACCUUGGCCGAAGUUCAUGCGGUGGUAAACGAGCUGCUGAGCAGCGUGGAUGAACCACCGCGUCGUCCAUCGAAGAGAUGUGUGAAUCUCACGGAGCUGCUGAACGCCAGUGAGGC .....((((((((((.(..(((((((((((...((.(((((...))))).)).....)))))))))).)..).)))..(((((......))))).....)))((((.....)))))))). ( -43.10) >DroVir_CAF1 28994 120 - 1 CGCCACACUGGCCGAGGUGCACGCCGUGGUUAACGAGCUGCUCAGCAGUGUGGACGAGCCGCCCAGGCGACCAUCGAAGCGCUGCAUCAAUCUCACCGAGCUGCUCAACGCCAGCGAGGC .(((.(.(((((.((((((((.(((((.....))).)))))...(((((((...(((..(((....)))....)))..)))))))....)))))...(((...)))...))))).).))) ( -48.10) >DroGri_CAF1 18143 120 - 1 UGCCACUCUGGCCGAAGUCCAUGCUGUUGUCAAUGAGCUGCUGAGCAGCGUGGAUGAGCCACCGAGGCGUCCCUCGAAGCGCUGCAUCAAUUUCACGGAGCUCCUCAACGCCAGCGAGGC .(((.(.(((((...(((....)))((((.....(((((.(((((((((((((.....))))(((((....)))))....))))).......))).).)))))..))))))))).).))) ( -45.31) >DroWil_CAF1 26210 120 - 1 CUCAACUCUGGCCGAGGUUCAUGCGGUGGUCAAUGAGCUGUUAAGCAGUGUGGAUGAACCACCGCGUAGACCAUCGAAACGUUGUGUCAAUUUGAUGGAACUACUUAAUGCCAGCGAGUC (((....(((((((((((..((((((((((((....((((.....)))).....)).))))))))))..))).)))....(((.((((.....)))).)))........))))).))).. ( -46.10) >DroMoj_CAF1 20373 120 - 1 CGCCACCCUGGCCGAGGUGCAUGCGGUGGUCAACGAGCUGCUGAGCAGCGUCGAUGAGCCGCCGCGGCGGCCCUCCAAGCGCUGCAUCAACCUGACCGAGCUGCUCAAUGCCAGCGAGGC .(((.(.(((((.((((.((.(((((((((((.((((((((...))))).))).))).))))))))...))))))..((((((...((.....))...))).)))....))))).).))) ( -56.40) >DroAna_CAF1 21234 120 - 1 CACCACUUUGGCGGAGGUUCAUGCGGUGGUUAACGAACUGCUGAGCAGUGUGGAUGAACCACCGCGGCGACCAUCCAAGAGGUGUGUGAAUCUCACGGAUGUCCUGAAUGCCAGUGAAUC ...((((..((((((((((..((((((((((..((.(((((...))))).))....))))))))))..)))).)))..((.((.((((.....)))).)).))......))))))).... ( -49.90) >consensus CGCCACUCUGGCCGAGGUUCAUGCGGUGGUCAACGAGCUGCUGAGCAGCGUGGAUGAACCACCGCGGCGACCAUCGAAGCGCUGCAUCAAUCUCACGGAGCUGCUCAACGCCAGCGAGGC .....(.((((((((((((..(((((((((......(((((...)))))........)))))))))..)))).)))....(((.(.((.....)).).)))........))))).).... (-29.05 = -29.77 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:21 2006