Locus 1460

Sequence ID 2L_DroMel_CAF1
Location 3,868,123 – 3,868,233
Length 110
Max. P 0.940437
window2378

overview

Window 8

Location 3,868,123 – 3,868,233
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.56
Mean single sequence MFE -45.78
Consensus MFE -35.42
Energy contribution -35.94
Covariance contribution 0.52
Combinations/Pair 1.09
Mean z-score -2.23
Structure conservation index 0.77
SVM decision value 1.29
SVM RNA-class probability 0.940437
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3868123 110 - 22407834
GUUACAAAAUUGAUGACUUCAUCGAGGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUUAGC-----CAGGACCUCGAAGCCCC-CGG----CCCG
.........((((((....)))))).(((((.((.((((((((....))))))))(((((((((((((....))))))).......-----...))))))...))...-.))----))). ( -41.40)
>DroSec_CAF1 4547 109 - 1
GUUACAAAAUUGAUGACUUCAUCG-GGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC-----CAGGACCUCGAAGCCCC-CGG----CCCG
...........((((....))))(-(((((...(.((((((((....))))))))(((((((((((((....))))))).......-----...)))))))..)))))-)..----.... ( -43.30)
>DroSim_CAF1 4504 109 - 1
GUUACAAAAUUGAUGACUUCAUCG-GGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC-----CAGGACCUCGAAGACCC-CGG----CCCG
..........(((((....)))))-((((((..(.((((((((....))))))))(((((((((((((....))))))).......-----...)))))))..)))))-)..----.... ( -43.20)
>DroEre_CAF1 4543 111 - 1
GUUACAAAAUUGAUGACUUCAUCG-GG-GGCUGGACUUUCCAAGAAGAUGGGGCGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC-----CAGGACCUCGCAGCCCCGCGCC--CCCCA
...........((((....))))(-((-((((((.....)))....(.((((((.(((((((((((((....))))))).......-----...))))))...))))))))))--))).. ( -52.80)
>DroYak_CAF1 4579 118 - 1
GUUACAAAAUUGAUGACUUCAUCG-GGGGGCUGGACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGCCUUUACAGGACCUCGAAGCCCC-CGCCGAGUACA
..(((.....(((((....)))))-(((((((...((((((((....))))))))(((((((((((((....))))))).......((....))))))))..))))))-).....))).. ( -48.20)
>consensus
GUUACAAAAUUGAUGACUUCAUCG_GGGGUCCGCACUUUUCAAGAAGUUGGAGAGGAGGUCAGGGCGCAGGUGCGUCCUUUUCAGC_____CAGGACCUCGAAGCCCC_CGG____CCCG
...........((((....))))..((((((....((((((((....))))))))(((((((((((((....))))))).....(......)..))))))...))))).).......... (-35.42 = -35.94 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:14 2006