Locus 1458

Sequence ID 2L_DroMel_CAF1
Location 3,865,134 – 3,865,236
Length 102
Max. P 0.645739
window2374

overview

Window 4

Location 3,865,134 – 3,865,236
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.31
Mean single sequence MFE -42.23
Consensus MFE -28.23
Energy contribution -28.32
Covariance contribution 0.09
Combinations/Pair 1.25
Mean z-score -1.62
Structure conservation index 0.67
SVM decision value 0.23
SVM RNA-class probability 0.645739
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3865134 102 - 22407834
GACAGACGCCUCCGAGUCCGUGGUGCGCACAGAUUCCUUCGAUGGUGUCUUUUGCGGCAGCAAUCGAGUGUGCUUGCUCUGGCGCGUCUCCGUGUUGUCCUC
...(((((((((.(((((.(((.....))).)))))....)).))))))).....(((((((...(((((((((......)))))).)))..)))))))... ( -37.60)
>DroPse_CAF1 58774 102 - 1
AACCGAGGCCUCCGAGUCUACGGUGGCCAUCGACUCCUUGGAGGAUCUCUUCUCGGGCAGCAGGCGCGUGUGACGACUCUGAUGCGUCUCGUUGCCAUCCUC
....((((((((((((....((((....))))....)))))))).))))......((((((((((((((..((....))..)))))))).))))))...... ( -42.80)
>DroSec_CAF1 1545 102 - 1
GACAGACGCCUCCGAGUCCGUGGUGCGCACAGAUUCCUUCGAUGGGGUCUUUUGCGGCAGCAGGCGAGUGUGCUUGCUCUGGCGCGUUUCCGUGUUGUCCUC
(((((.((((..((....)).)))))(((((((((((......)))))))...(((.(((..((((((....))))))))).)))......))))))))... ( -37.90)
>DroEre_CAF1 1547 102 - 1
AACAGACGCCUCCGAGUCCGUGGUGCGCACAGACUCCUUUGACGGCGUCUUCUGCGGCAGCAGGCGAGUGUGCUUGCUUUGGCGCGUCUCCGUGUUGUCCUC
...(((((((((.(((((.(((.....))).)))))....)).))))))).....(((((((.(.(((((((((......)))))).)))).)))))))... ( -44.20)
>DroYak_CAF1 1586 102 - 1
AACAGACGCCUCCGAGUCUGUGGUGCGCACGGACUCCUUUGAUGGCGUCUUUUGCGGCAGCAGGCGAGUGUGCUUGCUUUGGCGCGUCUCCGUGUUGUCCUC
...(((((((((.(((((((((.....)))))))))....)).))))))).....(((((((.(.(((((((((......)))))).)))).)))))))... ( -48.10)
>DroPer_CAF1 58425 102 - 1
AACCGAGGCCUCCGAGUCUACGGUGGCCAUCGACUCCUUGGAGGAUCUCUUCUCGGGCAGCAGGCGCGUGUGACGACUCUGAUGCGUCUCGUUGCCAUCCUC
....((((((((((((....((((....))))....)))))))).))))......((((((((((((((..((....))..)))))))).))))))...... ( -42.80)
>consensus
AACAGACGCCUCCGAGUCCGUGGUGCGCACAGACUCCUUCGAUGGUGUCUUCUGCGGCAGCAGGCGAGUGUGCUUGCUCUGGCGCGUCUCCGUGUUGUCCUC
....((((((((.(((((.(((.....))).)))))....)).))))))......(((((((...(((((((((......)))))).)))..)))))))... (-28.23 = -28.32 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:10 2006