Locus 1454

Sequence ID 2L_DroMel_CAF1
Location 3,852,049 – 3,852,152
Length 103
Max. P 0.865505
window2366 window2367

overview

Window 6

Location 3,852,049 – 3,852,152
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.88
Mean single sequence MFE -37.21
Consensus MFE -24.50
Energy contribution -24.58
Covariance contribution 0.08
Combinations/Pair 1.00
Mean z-score -3.17
Structure conservation index 0.66
SVM decision value 0.85
SVM RNA-class probability 0.865505
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3852049 103 + 22407834
UGUGUAAUCAUUUGUGCCCUUUUCUU-------------UGGCCGUUGUCAACAUAUCUGGCUUAUGUGAGUCAGAAUUAUGUGACGAUCG--CUGCGGCGGCG--AACGGCAAAAGGUU
.(..(((....)))..).....((((-------------(.((((((((((.((((((((((((....))))))))..))))))))))(((--(((...)))))--).)))).))))).. ( -36.20)
>DroSim_CAF1 40003 103 + 1
UGCGUAAUCAUUUGUGCCCUUUUCUU-------------CGGCCGUUGUCAACAUAUCUGGCUUAUGUGAGUCAGAAUUAUGUGACGAUCG--CUGCGGCGGCG--AACGGCAAAAGGUU
.((((((....))))))((((((...-------------..((((((((((.((((((((((((....))))))))..))))))))))(((--(((...)))))--).)))))))))).. ( -36.10)
>DroEre_CAF1 45893 103 + 1
UGUGUAAUCAUUUGUGCCCUUUUCUU-------------CGGCCGUUGUCAACAUAUCUGGCUUAUGUGAGUCAGAAUUAUGUGACGAUCG--CUGCGGCGGCG--AACGGCAAAAGGUU
.(..(((....)))..)((((((...-------------..((((((((((.((((((((((((....))))))))..))))))))))(((--(((...)))))--).)))))))))).. ( -36.10)
>DroWil_CAF1 74958 103 + 1
UGUGUAAUCAUUUGUGGCCUUUUCUUUUCUUCUUUCAUUUCGCCGUUGUCAACAUAUCUGGCUUAUGUGAGUCAGAAUUAUGUGACGAUGG-----------------CGGCAAAAGGCU
...............((((((((................((((((((((((.((((((((((((....))))))))..)))))))))))))-----------------))).)))))))) ( -36.63)
>DroYak_CAF1 42823 103 + 1
UGUGUAAUCAUUUGUGCCCUUUUCUU-------------UGGCCGUUGUCAACAUAUCUGGCUUAUGUGAGUCAGAAUUAUGUGACGAUCG--CUGCGGCGGCG--AAAGGCAAAAGGUU
.(..(((....)))..)(((((((((-------------(.((((((((((.((((((((((((....))))))))..))))))))))).(--(....))))).--)))))..))))).. ( -36.80)
>DroAna_CAF1 41346 101 + 1
GCUCUGA------AUGCCCUUUUCUU-------------CGGCCGUUGUCAACAUAUCUGGCUUAUGUGAGUCAGAAUUAUGUGACGAUCGGCCAGCGGCAGCUUCGGCGGCGAAUCGUU
(((((((------(((((((......-------------.(((((((((((.((((((((((((....))))))))..)))))))))).))))))).))))..))))).)))........ ( -41.41)
>consensus
UGUGUAAUCAUUUGUGCCCUUUUCUU_____________CGGCCGUUGUCAACAUAUCUGGCUUAUGUGAGUCAGAAUUAUGUGACGAUCG__CUGCGGCGGCG__AACGGCAAAAGGUU
.........................................((((((((((.((((((((((((....))))))))..)))))))))))......((....))......)))........ (-24.50 = -24.58 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 3,852,049 – 3,852,152
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.88
Mean single sequence MFE -26.25
Consensus MFE -16.99
Energy contribution -18.41
Covariance contribution 1.42
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.65
SVM decision value -0.03
SVM RNA-class probability 0.519845
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3852049 103 - 22407834
AACCUUUUGCCGUU--CGCCGCCGCAG--CGAUCGUCACAUAAUUCUGACUCACAUAAGCCAGAUAUGUUGACAACGGCCA-------------AAGAAAAGGGCACAAAUGAUUACACA
..((((((((((((--(((.......)--)))..((((((((..((((.((......)).)))))))).)))).)))))..-------------...))))))................. ( -26.50)
>DroSim_CAF1 40003 103 - 1
AACCUUUUGCCGUU--CGCCGCCGCAG--CGAUCGUCACAUAAUUCUGACUCACAUAAGCCAGAUAUGUUGACAACGGCCG-------------AAGAAAAGGGCACAAAUGAUUACGCA
..((((((((((((--(((.......)--)))..((((((((..((((.((......)).)))))))).)))).)))))..-------------...))))))................. ( -26.50)
>DroEre_CAF1 45893 103 - 1
AACCUUUUGCCGUU--CGCCGCCGCAG--CGAUCGUCACAUAAUUCUGACUCACAUAAGCCAGAUAUGUUGACAACGGCCG-------------AAGAAAAGGGCACAAAUGAUUACACA
..((((((((((((--(((.......)--)))..((((((((..((((.((......)).)))))))).)))).)))))..-------------...))))))................. ( -26.50)
>DroWil_CAF1 74958 103 - 1
AGCCUUUUGCCG-----------------CCAUCGUCACAUAAUUCUGACUCACAUAAGCCAGAUAUGUUGACAACGGCGAAAUGAAAGAAGAAAAGAAAAGGCCACAAAUGAUUACACA
.(((((((..((-----------------((...((((((((..((((.((......)).)))))))).))))...))))...(....)........)))))))................ ( -23.70)
>DroYak_CAF1 42823 103 - 1
AACCUUUUGCCUUU--CGCCGCCGCAG--CGAUCGUCACAUAAUUCUGACUCACAUAAGCCAGAUAUGUUGACAACGGCCA-------------AAGAAAAGGGCACAAAUGAUUACACA
..((((((..((((--.(((((....)--)....((((((((..((((.((......)).)))))))).))))...))).)-------------))).))))))................ ( -25.90)
>DroAna_CAF1 41346 101 - 1
AACGAUUCGCCGCCGAAGCUGCCGCUGGCCGAUCGUCACAUAAUUCUGACUCACAUAAGCCAGAUAUGUUGACAACGGCCG-------------AAGAAAAGGGCAU------UCAGAGC
...((...(((.....(((....)))(((((...((((((((..((((.((......)).)))))))).))))..))))).-------------........)))..------))..... ( -28.40)
>consensus
AACCUUUUGCCGUU__CGCCGCCGCAG__CGAUCGUCACAUAAUUCUGACUCACAUAAGCCAGAUAUGUUGACAACGGCCA_____________AAGAAAAGGGCACAAAUGAUUACACA
..((((((((((((...((....)).........((((((((..((((.((......)).)))))))).))))))))))..................))))))................. (-16.99 = -18.41 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:04 2006