Locus 1452

Sequence ID 2L_DroMel_CAF1
Location 3,849,875 – 3,849,973
Length 98
Max. P 0.788063
window2364

overview

Window 4

Location 3,849,875 – 3,849,973
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -19.80
Consensus MFE -11.32
Energy contribution -12.10
Covariance contribution 0.78
Combinations/Pair 1.05
Mean z-score -2.45
Structure conservation index 0.57
SVM decision value 0.58
SVM RNA-class probability 0.788063
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3849875 98 + 22407834
AAUUCCAAAAAUAUAGAUAUGUUAUAUAUUUAUAUAUGUCUUAUAUUUUUCUUCCAGUGCUGCAAGUGCCAUAUUUUCAUUUCUGACUGUAAAUGUCA
......((((((((((((((((.(((....)))))))))).)))))))))......(..(.....)..)...............(((.......))). ( -14.70)
>DroSec_CAF1 38570 86 + 1
A-UUCC--AAAUAUAAAUAAGUUAUAUGGUUAUCUGUGU---------UUUUUCCAGUGUUGCAAGUGCCAUUCUGGCAUUUGUGACUGUAAAUGUCA
.-....--(((((((.((((.(.....).)))).)))))---------))........((..((((((((.....))))))))..))........... ( -21.00)
>DroSim_CAF1 37836 86 + 1
A-CUAC--AUAUAUAAAUAAGUUAUAUGGUUAUAUGUGU---------UUUUUCCAGUGUUGCAAGUGCCAUUCUGGCAUUUGUGACUGUAAAUGUCA
.-..((--((((((((...(......)..))))))))))---------..........((..((((((((.....))))))))..))........... ( -23.70)
>consensus
A_UUCC__AAAUAUAAAUAAGUUAUAUGGUUAUAUGUGU_________UUUUUCCAGUGUUGCAAGUGCCAUUCUGGCAUUUGUGACUGUAAAUGUCA
..........((((((.....))))))...........................((((..((((((((((.....))))))))))))))......... (-11.32 = -12.10 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:01 2006