Locus 145

Sequence ID 2L_DroMel_CAF1
Location 433,566 – 433,664
Length 98
Max. P 0.994258
window228

overview

Window 8

Location 433,566 – 433,664
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 92.12
Mean single sequence MFE -22.20
Consensus MFE -21.30
Energy contribution -21.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.96
SVM decision value 2.46
SVM RNA-class probability 0.994258
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 433566 98 - 22407834
AAGAUACAAAAACAAAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCAUAAUACCGUAGAAAAAUUAGCAGU
.........................(((.(((((..((((((((........))))))))..)).))).))).......................... ( -21.30)
>DroSec_CAF1 11008 94 - 1
AAGAUACAAAA----AAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCAUAAUACCGUAGAAAAAUUAGCAGU
...........----..........(((.(((((..((((((((........))))))))..)).))).))).......................... ( -21.30)
>DroSim_CAF1 10060 95 - 1
AAGAUACAAAA---AAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCGUAAUACCGUAGAAAAAUUAGCAGU
...........---........((.(((.(((((..((((((((........))))))))..)).))).))).))....................... ( -22.80)
>DroEre_CAF1 11065 97 - 1
AGA-UACAAAAACAAAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGAAGGCGUGCGAAACUAUGCUGCCGUAAUACCCUAGAAAAAUUAGCAGC
...-..................((.(((.(((((..((((((((........))))))))..)).))).))).))....................... ( -22.80)
>DroYak_CAF1 10640 98 - 1
AAAGUACAACAACAAUAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUGGAAGGCGUGCGAAACUAUGCUGCCGUAAUACCCUAGAAAAAUUAGCCGU
......................((.(((.(((((..((((((((........))))))))..)).))).))).))....................... ( -22.80)
>consensus
AAGAUACAAAAACAAAAAAGAAGCCGCAACGUGUGCCGCAUGCCAAAUCGGAGGCGUGCGAAACUAUGCUGCCGUAAUACCGUAGAAAAAUUAGCAGU
.........................(((.(((((..((((((((........))))))))..)).))).))).......................... (-21.30 = -21.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:23 2006