| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,837,718 – 3,837,838 |
| Length | 120 |
| Max. P | 0.981362 |
| Location | 3,837,718 – 3,837,838 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.28 |
| Mean single sequence MFE | -43.72 |
| Consensus MFE | -37.11 |
| Energy contribution | -37.95 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3837718 120 - 22407834 UGAUUGGUCAUUAUGUACUCGUAGAUGCCAUUCAGGGUUAGACGCUUCUCGGAACUCUGACGAAUGGCCAUCAUGAUUAGGGCAUUGUAGCUGUAAGGUGGCUUUUCGUUGCCUUUCUUA .((.((((..(((((....)))))..)))).))((((((...((.....)).))))))((((((.(((((((....(((.(((......))).)))))))))).)))))).......... ( -35.50) >DroSec_CAF1 26586 120 - 1 UGAUUGGUCAUGAUGUACUCGUAGAUGCCAUUCAGGGUUAGACGCUUUUCGGAGCUCUGACGAAUGGCCAUCAUGAUCAGGGCAUUGUAGCUGUAAGGUGGCUUUUCGUUGCCCUUCUUA ....(((((((((((...........(((((((...((((((.((((....))))))))))))))))))))))))))))(((((.((.((((.......))))...)).)))))...... ( -46.50) >DroEre_CAF1 31177 120 - 1 UGAUUGGUCAUGAUGUACUCGUAGAUGCCAUUCAGAGUUAGACGCUUCUCGGAGCUCUGGCGAAUGGCCAUCAUGAUCAGGGCAUUGUAGCUGUACGGUGGCUUUUCGUUGCCCUUUUUA ....(((((((((((...........(((((((...((((((.((((....))))))))))))))))))))))))))))(((((.((.((((.......))))...)).)))))...... ( -47.10) >DroWil_CAF1 50579 120 - 1 UGAUUGGUCAUUAUGUACUCGUAGAUCCCAUUCAGAGUUAGACGUUUCUCCUGACUCUGGCGUAUGGCCAUCAUAAUGAGGGCAUUGUAGCUGUAAGGGGGCUUCUCAUUGCCCUUCUUA ((((.((((((.((((.......(....)...(((((((((.........)))))))))))))))))))))))(((.(((((((.((.((((.......))))...)).))))))).))) ( -39.60) >DroYak_CAF1 27946 120 - 1 UGAUUGGUCAUGAUGUACUCGUAGAUGCCAUUCAGUGUUAGACGCUUCUCGGAACUCUGACGAAUGGCCAUCAUGAUCAAGGCAUUAUAGCUGUACGGCGGCUUUUCGUUGCCCUUUUUA ...((((((((((((...........(((((((((((.....))))..((((....)))).)))))))))))))))))))((((....(((((.....)))))......))))....... ( -42.00) >DroAna_CAF1 27853 120 - 1 UGAUUGGUCAUGAUGUACUCGUAGAUGCCAUUCAGGGUCAGGCGCUUCUCCGCGCUCUGCCGGAUGGCCAUCAUGAUCAGGGCGUUGUAGCUGUACGGCGGCUUCUCGUUGCCCUUCUUG ....(((((((((((...........(((((((..((.(((((((......)))).)))))))))))))))))))))))(((((.((.(((((.....)))))...)).)))))...... ( -51.60) >consensus UGAUUGGUCAUGAUGUACUCGUAGAUGCCAUUCAGGGUUAGACGCUUCUCGGAACUCUGACGAAUGGCCAUCAUGAUCAGGGCAUUGUAGCUGUAAGGUGGCUUUUCGUUGCCCUUCUUA ....(((((((((((...........(((((((...((((((.((((....))))))))))))))))))))))))))))(((((.((.(((((.....)))))...)).)))))...... (-37.11 = -37.95 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:44 2006