Locus 1437

Sequence ID 2L_DroMel_CAF1
Location 3,822,453 – 3,822,559
Length 106
Max. P 0.690690
window2340

overview

Window 0

Location 3,822,453 – 3,822,559
Length 106
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 93.40
Mean single sequence MFE -27.00
Consensus MFE -24.77
Energy contribution -24.78
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.92
SVM decision value 0.33
SVM RNA-class probability 0.690690
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3822453 106 - 22407834
CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCCAACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCGAUGAAAAAAAUGU
.(((((.((..(((((((....)))))))....(((.....((((((((((((((........))))))))..))))))....)))......)))))))....... ( -28.60)
>DroSec_CAF1 11335 105 - 1
CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCCAACAAUGGCCAUGAUCGAUCUAUCGUAGCACACCCGAGGA-AAAAAUGU
.((((..((..(((((((....)))))))....(((((...((((((((((((((........))))))))..)))))).))).))......)).))-))...... ( -27.50)
>DroEre_CAF1 15694 106 - 1
CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCGCCACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCAAAGAACCAAAUGU
..(((......(((((((....)))))))....(((.....(((((((((((((((......)))))))))..))))))....))).........)))........ ( -26.50)
>DroYak_CAF1 11681 106 - 1
CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCGAACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCAAAAGAGCAAAUCU
....((((((((((((((....)))))))......))).))))((((((((((((........))))))))..)))).....((((.(........).)))).... ( -25.40)
>consensus
CUUUCAGUCAUUGUCCUGUCGACAGGAUAUUCAGCAUGUACUGGAUUUUAUGGUCCCAACAAUGGCCAUGAUCGAUCUAUCGUUGCACACCCAAAGAAAAAAAUGU
...........(((((((....)))))))....(((((...((((((((((((((........))))))))..)))))).))).)).................... (-24.77 = -24.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:37 2006