Locus 1435

Sequence ID 2L_DroMel_CAF1
Location 3,819,401 – 3,819,497
Length 96
Max. P 0.999116
window2338

overview

Window 8

Location 3,819,401 – 3,819,497
Length 96
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 92.06
Mean single sequence MFE -26.38
Consensus MFE -23.04
Energy contribution -22.56
Covariance contribution -0.48
Combinations/Pair 1.17
Mean z-score -2.49
Structure conservation index 0.87
SVM decision value 3.38
SVM RNA-class probability 0.999116
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3819401 96 - 22407834
ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCUCCACACUGCGGAACAACUUCCC---CAAGUUAUGGCCACAAAAA-A
..........(((((((.(((.(..((((..((((........))))))))..).)))(((..((((....)))).---..)))..))))))).....-. ( -27.70)
>DroSec_CAF1 8312 94 - 1
ACUUCCUUCCGUGGCAACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCUCCA-ACUGCGGAACAACUUCCC---CAAGUUAUGGCCACAA-AA-A
..........(((((.........(((.((((..........)))).)))......(-(((..((((....)))).---..))))...)))))..-..-. ( -22.30)
>DroSim_CAF1 8705 94 - 1
ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCGCAUCUCCA-ACUGCGGAACAACUUGCC---CAAGUUAUGGCCACAA-AA-A
..........((((((((((((((((......)))...))))))..(((((......-..)))))...(((((...---.))))).)))))))..-..-. ( -26.20)
>DroEre_CAF1 12713 96 - 1
ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACUUCUCCA-ACUGCCGAACAACUUCCC--CCGGGUUAUGGCCACAA-AAAC
..........(((((((.(.(((((((.((((..........)))).))))).))).-....(((...........--.)))....)))))))..-.... ( -25.40)
>DroYak_CAF1 8481 98 - 1
ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCGCCA-ACUGCGGCACAACUUGCCCCCAGAGUUAUGGCCACAA-AACA
..........(((((((.((((..(((.((((..........)))).))).))))..-.(((.((((.....))))..))).....)))))))..-.... ( -30.30)
>consensus
ACUUCCUUCCGUGGCCACGUGAAAGUGUGUCAGCUCCAUUCAUGGCUCACAUCUCCA_ACUGCGGAACAACUUCCC___CAAGUUAUGGCCACAA_AA_A
..........(((((((.((....(((.((((..........)))).)))...(((.......)))))(((((.......))))).)))))))....... (-23.04 = -22.56 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:35 2006